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Cavallin, I.

Publications and source records attributed to Cavallin, I..

2 recordsLinked to original sources

A minimal growth medium for Pseudomonas azotoformans associated with insect gut

Pseudomonas spp. can be found associated with several insect hosts. Some of these strains play a crucial role in helping their hosts overcome biotic challenges such as plant defence effectors. Defined media and optimally minimal media are instrumental in studying the physiology and metabolic pathways of microorganisms. In the case of the insect-associated Pseudomonas azotoformans isolated from Galeruca laticollis gut, we tested six previously designed defined/minimal media. To determine the optimal medium, we compared the bacteriums growth performances on the different defined/minimal media to its growth performance on a rich medium using the Dynamic Time Warping Algorithm. The growth results at both 25{degrees}C and 30{degrees}C indicated the SMM as the optimal medium, with bacterial growth performances being the closest to a rich medium. Therefore, this medium would be highly suitable to study the catabolic pathways for the degradation of some xenobiotics in P. azotoformans.

microbiology↗

Human tRNA methyltransferase ALKBH8 targets wider repertoire of tRNAs and non-coding RNAs

Transfer RNAs acquire a large plethora of chemical modifications. Among those, modifications of the anticodon loop play important roles in translational fidelity and tRNA stability. Four human wobble U containing tRNAs obtain 5-methoxycarbonylmethyluridine (mcm5U34) or 5-methoxycarbonylmethyl-2-thiouridine (mcm5s2U34), which play a role in decoding. This mark involves a cascade of enzymatic activities. The last step is mediated by Alkylation Repair Homolog 8 (ALKBH8). In this study, we performed a transcriptome-wide analysis of the repertoire of ALKBH8 RNA targets. Using a combination of HITS-CLIP-seq and RIP-seq analyses, we uncover ALKBH8-bound RNAs. It targets an additional wobble U-containing tRNA tRNALys(UUU). More interestingly, the spectrum of bound RNAs includes other types of non-coding RNAs, such as C/D box snoRNAs, 7SK RNA or some miRNAs, respectively.

molecular biology↗