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Carpenter, M. D.

Publications and source records attributed to Carpenter, M. D..

3 recordsLinked to original sources

Electrode Reduction by Vibrio natriegens Depends on Balanced Expression of Multiheme Cytochromes

Multiheme cytochromes c can facilitate electron transfer across the periplasm and outer membrane of Gram-negative bacteria to enable extracellular electron transfer (EET). EET empowers bacteria to maintain redox balance in oxygen-poor environments by donating electrons to solid materials. The resulting electron flux makes EET pathways useful tools for interfacing microorganisms with electronics. Recently, Vibrio natriegens, a marine bacterium notable for its rapid growth and expanding biotechnological applications, was found to perform iron reduction in a multiheme cytochrome c-dependent manner. However, the role of the V. natriegens EET genes in facilitating reduction of electrodes remains unexplored. Through single gene deletion and complementation, we find that each of cymA, pdsA, mtrA, and mtrB are required for production of electrical current by V. natriegens cultures. Curiously, deletion of the outer membrane decaheme cytochrome mtrC diminished but did not abolish electrode reduction. Modulating the induction of expression of mtrA and mtrC revealed that only a narrow range of induction of these decaheme cytochromes allows balanced cytochrome c production and EET. These findings indicate that a multiheme cytochrome-based EET pathway enables V. natriegens to reduce electrodes and that this pathway requires carefully balanced gene expression to function. This characterization of the role of multiheme cytochromes in the electroactivity of an emerging microbial chassis for biotechnology will enable new bioelectronic applications for V. natriegens and new understanding of the metabolic function of EET.

microbiology↗

Determinants of multiheme cytochrome extracellular electron transfer uncovered by systematic peptide insertion

The multiheme cytochrome MtrA enables microbial respiration by transferring electrons across the outer membrane to extracellular electron acceptors. While structural studies have identified residues that mediate MtrA binding to hemes and to other cytochromes that facilitate extracellular electron transfer (EET), the relative importance of these interactions for EET is not known. To better understand EET, we evaluated how insertion of an octapeptide across all MtrA backbone locations affects Shewanella oneidensis MR-1 respiration on Fe(III). EET efficiency was found to be inversely correlated with insertion proximity to the heme prosthetic groups. Mutants with decreased EET also arose from insertions in a subset of the regions that make residue-residue contacts with the porin MtrB, while all sites contacting the extracellular MtrC presented high peptide insertion tolerance. MtrA variants having peptide insertions within the CXXCH motifs that coordinate heme cofactors retained some ability to support respiration on Fe(III), although these variants presented significantly decreased EET. Furthermore, the fitness of cells expressing different MtrA variants under Fe(III)-respiring conditions correlated with anode reduction. The peptide-insertion profile, which represents the first comprehensive sequence-structure-function map for a multiheme cytochrome, implicates MtrA as a strategic protein engineering target for regulating EET.

synthetic biology↗

Cell-Type Specific Profiling of Histone Post-Translational Modifications in the Adult Mouse Striatum

Histone post-translational modifications (hPTMs) regulate gene expression via changes in chromatin accessibility and transcription factor recruitment. At a given locus, the coordinated enrichment of several distinct hPTMs regulate gene expression in response to external stimuli. However, neuronal hPTMs have been primarily characterized in bulk brain tissue and/or tissue pooled across subjects. This obscures both cell-type and individual variability, features essential to understand individual susceptibility to psychiatric disease. To address this limitation, we optimized a hybrid protocol, ICuRuS, to profile both activating and repressive hPTMs in neuronal subtypes from a single mouse. We report here profiling of striatal medium spiny neuron (MSN) subtypes, genetically defined by expression of Adenosine 2a Receptor (A2a) or Dopamine Receptor D1 (D1), which differentially regulate reward processing and pathophysiology. Using ICuRuS, we defined genome-wide, A2a- or D1-specific combinatorial hPTM profiles, and discovered regulatory epigenomic features at genes implicated in neurobiological function and disease.

neuroscience↗