Biology subjects

Carbonnel, S.

Publications and source records attributed to Carbonnel, S..

4 recordsLinked to original sources

bioRxiv2026

Unequal requirement of KAI2 for AM symbiosis across angiosperms

Development of arbuscular mycorrhiza (AM), a symbiosis between plants and beneficial Glomeromycotan fungi, is largely under plant control. Several genes, required for AM development, are proposed to be regulated by the karrikin signalling module, comprising the alpha/beta hydrolase receptor KARRIKIN INSENSITIVE 2 (KAI2), the F-box protein MORE AXILLARY GROWTH2 (MAX2) and the transcriptional repressor SUPPRESSOR OF MAX2 1 (SMAX1), which is ubiquitylated for proteasomal degradation upon KAI2-ligand-induced binding to the KAI2-MAX2 complex. Rice and Brachypodium distachyon kai2 mutants are incapable of forming AM. Here, we show that in Lotus japonicus, Pisum sativum, and Nicotiana benthamiana, KAI2 only quantitatively affects AM development, indicating angiosperms vary in their requirement for KAI2-signalling to support AM. Comparative transcriptomics of L. japonicus and B. distachyon roots after treatment with fungal signalling molecules revealed some AM-relevant genes respond KAI2-independently in L. japonicus but not in B. distachyon. Consistently we obtained evidence for low-level degradation of SMAX1 in Ljkai2a,b observed through a ratiometric reporter for the SMAX1 degron (SMAX1D2). Further, we found an unexpected accumulation of SMAX1D2 in in response to AM even in wild type. Together, this suggests an unexpected role of SMAX1 accumulation in AM roots and that in AM symbiosis of L. japonicus, redundant mechanisms drive SMAX1 degradation and gene activation independently of KAI2.

plant biology↗

bioRxiv2022

Conserved mechanism for perception of root-active CLE peptides

Precision in sensing the environmental cues and adjusting the growth and the physiology of the root system are necessary for plant robustness. Plants achieve their phenotypic plasticity by tightly controlling and buffering developmental decisions. In addition to the classical plant hormones that mediate plant development and stress responses, the CLE peptides constitute an additional crucial level of regulation. While the CLV3-CLV1 module appears to be highly conserved to control the proliferation of the shoot apical meristem stem cells, we do not yet fully understand the function of the additional CLE genes and whether they act in a similar way across the plant species, including tomato. Due to the small gene size and high sequence variability, it is extremely difficult to precisely annotate CLE genes in plant genomes. Here we present our analysis of the CLE family in tomato, based on a combination of iterative tBLASTn and Hidden-Markov-Model (HMM), which allowed us to identify thirty-seven new SlCLEs in addition to the fifteen reported previously. We could confirm the biological activities of selected SlCLEs in suppressing root meristematic cell divisions. We show that root response is mediated by SlCLAVATA2, indicating the conservation of CLE perception mechanism. One-sentence summaryUsing a combination of iterative tBLASTn and Hidden-Markov-Model approaches, we uncovered 37 new tomato CLE genes predominantly expressed in roots, and we showed a conserved effect on root meristem arrest, that was SlCLAVATA2-dependent. HighlightsO_LIWe applied a combined approach of iterative tBLASTn and Hidden-Markov-Model to identify fifty-two tomato SlCLE genes, including thirty-seven new genes C_LIO_LIAll identified genes encode for pre-propeptides with a single CLE-domain containing conserved residues similar to Arabidopsis C_LIO_LIAnalyzing the publicly available RNAseq datasets, we could confirm the expression of SlCLE genes that was often associated specifically with root or shoot, a certain developmental stage of the fruit, or with drought stress conditions C_LIO_LIRemarkably, the majority of SlCLE genes are predominantly expressed in the root tissues C_LIO_LIWe showed the conserved inhibitory effect on the root meristem and columella cells division for the selected SlCLE peptides that were SlCLAVATA2-dependent. C_LI

plant biology↗

bioRxiv2019

Duplicated KAI2 receptors with divergent ligand-binding specificities control distinct developmental traits in Lotus japonicus

Karrikins (KARs), smoke-derived butenolides, are perceived by the /{beta}-fold hydrolase KARRIKIN INSENSITIVE2 (KAI2) and are thought to mimic endogenous, yet elusive plant hormones tentatively called KAI2-ligands (KLs). The sensitivity to different karrikin types as well as the number of KAI2 paralogs varies among plant species, suggesting diversification and co-evolution of ligand-receptor relationships. In legumes, which comprise a number of important crops with protein-rich, nutritious seed, KAI2 has duplicated. We report sub-functionalization of KAI2a and KAI2b in the model legume Lotus japonicus and demonstrate that their ability to bind the synthetic ligand GR24ent-5DS differs in vitro as well as in genetic assays in Lotus japonicus and in the heterologous Arabidopsis thaliana background. These differences can be explained by the exchange of a widely conserved phenylalanine in the binding pocket of KAI2a with a tryptophan in KAI2b, which occured independently in KAI2 proteins of several unrelated angiosperms. Furthermore, two polymorphic residues in the binding pocket are conserved across a number of legumes and may contribute to ligand binding preferences. Unexpectedly, L. japonicus responds to diverse synthetic KAI2-ligands in an organ-specific manner. Hypocotyl development responds to KAR1, KAR2 and rac-GR24, while root system development responds only to KAR1. This organ-specificity cannot be explained by receptor-ligand preferences alone, because LjKAI2a is sufficient for karrikin responses in the hypocotyl, while LjKAI2a and LjKAI2b operate redundantly in roots. Our findings open novel research avenues into the evolution and diversity of butenolide ligand-receptor relationships, their ecological significance and the mechanisms controlling diverse developmental responses to different KAI2 ligands.

plant biology↗

bioRxiv2019

KAI2 regulates root and root hair development by modulating auxin distribution

Strigolactones (SLs) are endogenous signalling molecules that play important roles in controlling plant development. SL perception is closely related to that of karrikins, smoke-derived compounds presumed to mimic endogenous signalling molecules (KLs). SLs have been suggested to regulate root development. However, perception of both molecules requires the F-box protein MAX2 and the use of max2 mutants has hampered defining the exact role of SLs in roots. Here we dissect the role of SL and KL signalling in Arabidopsis root development using mutants defective in the /{beta} hydrolase receptors D14 and KAI2, which specifically perceive SLs and KLs, respectively. Both pathways together regulate lateral root density (LRD), but contrary to previous reports, KL signalling alone controls root hair density, root hair length and additionally root skewing, straightness and diameter. Members of the SMXL protein family are downstream targets of SL (SMXL6, 7, 8) and KL (SMAX1, SMXL2) signalling. We identified distinct and overlapping roles of these proteins in the regulation of root development. Both SMAX1/SMXL2 and SMXL6/SMXL7/SMXL8 regulate LRD, confirming that SL and KL signalling act together to regulate this trait, while the KL-signalling specific SMAX1 and SMXL2 regulate all other investigated root traits. Finally, we show that KL signalling regulates root hair development by modulating auxin distribution within the root.

plant biology↗