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Cao-Garcia, F. J.

Publications and source records attributed to Cao-Garcia, F. J..

2 recordsLinked to original sources

Mechanical forces and ligand-binding modulate Pseudomonas aeruginosa PilY1 mechanosensitive protein

Bacteria initiate colonization and biofilm formation in response to mechanical cues caused by surface proximity. The protein PilY1 has been proposed as a key actor mediating mechanosensing. PilY1 is a calcium and integrin-binding protein with additional roles in host adhesion and functional regulation of the type IV pili (T4P), the appendages involved in twitching motility, and various aspects of the surface-associated life of bacteria. Due to its extracellular location and involvement in several surface processes, PilY1 is exposed to mechanical forces that could modulate its different roles. Herein, we explore the effect of mechanical forces and ligand binding on the conformational dynamics of the PilY1 C-terminal domain. Our single-molecule approach demonstrates that PilY1 acts as a ligand-modulated force sensor. At high forces, PilY1 unfolding occurs through a hierarchical sequence of intermediates. When calcium is bound to its cognate site linked to T4P regulation, there is a long-range mechanical stabilization affecting several PilY1 domains, which ensures the structural integrity of the protein. In the low-force regime, the integrin-binding domain of PilY1 exhibits calcium-tuned force sensitivity and conformational dynamics akin to those of mechanosensor proteins. Integrin binding to this domain occurs under force, inducing a shortening of its unfolded extension. Our findings suggest that the roles of the PilY1 C-terminal domain are force and ligand-modulated, which could entail a mechanical-based compartmentalization of its functions.

biophysics↗

Mechanism of strand displacement DNA synthesis by the coordinated activities of human mitochondrial DNA polymerase and SSB

Many replicative DNA polymerases couple DNA replication and unwinding activities to perform strand displacement DNA synthesis, a critical ability for DNA metabolism. Strand displacement is tightly regulated by partner proteins, such as single-stranded DNA (ssDNA) binding proteins (SSBs) by a poorly understood mechanism. Here, we use single-molecule optical tweezers and biochemical assays to elucidate the molecular mechanism of strand displacement DNA synthesis by the human mitochondrial DNA polymerase, Pol{gamma}, and its modulation by cognate and noncognate SSBs. We show that Pol{gamma} exhibits a robust DNA unwinding mechanism, which entails lowering the energy barrier for unwinding of the first base pair of the DNA fork junction, by [~]55%. However, the polymerase cannot prevent the reannealing of the parental strands efficiently, which limits by [~]30-fold its strand displacement activity. We demonstrate that SSBs stimulate the Pol{gamma} strand displacement activity through several mechanisms. SSB binding energy to ssDNA additionally increases the destabilization energy at the DNA junction, by [~]25%. Furthermore, SSB interactions with the displaced ssDNA reduce the DNA fork reannealing pressure on Pol{gamma}, in turn promoting the productive polymerization state by [~]3-fold. These stimulatory effects are enhanced by species-specific functional interactions and have significant implications in the replication of the human mitochondrial DNA.

biophysics↗