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Caetano, A. R.

Publications and source records attributed to Caetano, A. R..

2 recordsLinked to original sources

Deviation from mendelian transmission of autosomal SNPs can be used to estimate germline mutations in humans exposed to ionizing radiation

We aimed to estimate the rate of germline mutations in the offspring of individuals accidentally exposed to Cesium-137 ionizing radiation. Performed analysis considered two distinct groups: a group males and females accidentally exposed to low doses of ionizing radiation from Cs137, the case group, and a control group of non-exposed participants. The case group included 37 participants (11 couples and 15 children born after the accident). The dose absorbed by exposed participants ranged from 0.2 to 0.5 Gray. The control group included 15 families from the state of Goias, with no history of radiation exposure. DNA samples from peripheral blood were analyzed with the Affymetrix GeneChip(R) CytoScanHD to assess de novo SNP-type mutations. A set of scripts previously developed was used to detect de novo mutations by comparing parent and offspring genotypes in each SNP marker. Overall numbers of observed Mendelian deviations were statistically significant between the exposed and control groups. Offspring from the population accidentally exposed to low IR doses showed [~] 46.5% more de novo Mendelian deviations than the control group. Parent-of-origin and type of nucleotide substitution were also inferred. Estimates of age-adjusted de novo germline mutation rates were obtained and correlated to Cs-137 radiation dose exposure to evaluate the usefulness of the rate of Mendelian deviations observed in polymorphic SNPs as a biomarker for exposure. This proved useful in a retrospective estimation of the rate of de novo germline mutations in a human population accidentally exposed to low doses of radiation from Cs-137. Obtained results suggest that observed burden of germline mutations identified in offspring could potentially be a useful biomarker to estimate levels of parental exposure to ionizing radiation.

genetics↗

How to better conserve with genetic data: origin and population structure of Brazilian locally adapted hair sheep (Ovis aries) breeds

Brazilian hair sheep constitute a genetic diversity hotspot of sheep breeds. These locally adapted genetic resources developed in harsh environments of the Brazilian Northwest (semi-arid) and maintained important traits for this region, such as parasite resistance, heat tolerance and high pelt quality. Genotypes (50K SNP chip) from seven Brazilian sheep breeds (5 hair and 2 coarse wool types) and 87 worldwide breeds were used to verify population structure, admixture and genetic diversity, using PCA and ADMIXTURE analyses. We constructed a phylogenetic tree and evaluated migration events between genetic groups using TREEMIX software. Brazilian Somali, a fat-tailed breed, was the unique breed with high relationship with East African breeds and formed a distinct cluster from other Brazilian breeds. This breed seems to contribute to formation of Santa Ines, Morada Nova and Brazilian Fat-tail breeds. Brazilian Blackbelly had a clear relationship with Barbados Blackbelly, which appeared as another group. Other Brazilian breeds seem to form a further genetic group with some recent admixtures. Morada Nova remained as a separate group, not showing a strong relationship with European or African breeds, only revealing a migration event from Sidaoun, an Algerian hair breed. Brazilian Fat-tail and Morada Nova share a common ancestor, but the first received introgressions from Brazilian Somali and Afrikaner breeds, explaining the fat-tail phenotype. Santa Ines received strong contribution from Bergamasca and had an admixed origin with recent introgressions from other breeds, mainly from Suffolk animals. In conclusion, Brazilian Somali and Brazilian Fat-tail are the most endangered sheep genetic resources in Brazil.

genomics↗