Biology subjects

Butts, C. T.

Publications and source records attributed to Butts, C. T..

3 recordsLinked to original sources

bioRxiv2025

Jasmonate-induced prey response in the carnivorous plant Drosera capensis

Drosera capensis is a carnivorous plant native to South Africa. Central to its prey capture and digestive processes is a complex array of biochemical processes triggering the production of both enzymes and small molecules. These processes are in part activated by the release of jasmonic acid, a plant defense hormone repurposed as a prey detection signal. Here, we use RNASeq and untargeted LC-MS metabolomics to study the response of D. capensis to a feeding stimulus. We confirm the expression of digestive proteins predicted in prior genomic work and show up- and downregulation for a number of enzyme classes in response to jasmonic acid. Metabolomics experiments indicate that many small molecules produced during feeding depend on specific nutrient inputs from prey (and not merely a jasmonic acid stimulus). These results shed light on the molecular basis of plant carnivory and the recruitment of existing biochemical pathways to perform specialized functions.

biochemistry↗

bioRxiv2022

Fighting isn't sexy in lekking Greater Sage-grouse (Centrocercus urophasianus)

In lekking systems, females can observe both male courtship displays and fights. It has been theorized that male-male agonism may function as a display, giving females more information about mate quality. However, males in many species, such as Greater Sage-grouse, often fight when females are absent, and can even attack during copulation attempts in seeming conflict with females choices. Traditional correlational approaches are inadequate to distinguish the underlying mechanisms of social interaction and can result in misleading associations between fighting and mating events. Using observations from a wild population, we posit a novel Relational Event Model that incorporates temporal dependencies of events among a network of individuals. We investigate how fighting among male sage-grouse predicts events such as future fights, copulation solicitations, and interrupted copulations. Our analysis reveals that fightings primary function is not to impress females. Indeed, males are less likely to start and more likely to leave fights with females present, plausibly to avoid entanglement in conflict that reduces availability to mate. Moreover, being drawn into these latter viscous cycles of combat and retribution constitutes a significant risk associated with initiating attacks on other males. However, fighting serves other roles, e.g., to deter copulation interruptions and rebuff competitors. Our findings suggest that social systems that regulate conflict and promote females choice based on display are likely fundamental to the stable evolution of leks.

animal behavior and cognition↗

bioRxiv2020

Sequence Characterization and Molecular Modeling of Clinically Relevant Variants of the SARS-CoV-2 Main Protease

The SARS-CoV-2 main protease (Mpro) is essential to viral replication and cleaves highly specific substrate sequences, making it an obvious target for inhibitor design. However, as for any virus, SARS-CoV-2 is subject to constant selection pressure, with new Mpro mutations arising over time. Identification and structural characterization of Mpro variants is thus critical for robust inhibitor design. Here we report sequence analysis, structure predictions, and molecular modeling for seventy-nine Mpro variants, constituting all clinically observed mutations in this protein as of April 29, 2020. Residue substitution is widely distributed, with some tendency toward larger and more hydrophobic residues. Modeling and protein structure network analysis suggest differences in cohesion and active site flexibility, revealing patterns in viral evolution that have relevance for drug discovery.

molecular biology↗