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Butler, E. R.

Publications and source records attributed to Butler, E. R..

4 recordsLinked to original sources

Utility and validity of group atlas versus personalized functional network approaches for depressive constructs

BackgroundTo understand the neurobiology underlying psychopathology, we need valid measurements of brain function. Group atlases for brain functional connectivity (FC) allow for efficient comparisons, but they fail to account for inter-individual variability in spatial features of networks, a problem that personalized approaches address. We assess the validity and predictive utility of group and personalized approaches of quantifying FC by 1) comparing effect sizes of associations with psychological metrics; and 2) accounting for spatial features of brain networks when examining the association between FC and psychological metrics. Methods324 teens ages 13-16 participated. The personalized approach for estimating networks was a hierarchical Bayesian model. Effect size comparisons were done by comparing the correlations between FC estimated using different methods (group, personalized, and the intersection of the group and personalized maps) and psychological metrics (depression, ruminative coping style, and sensitivity to punishment/reward) with Steiglers Z-test. We also conducted regressions, with psychological metrics as the dependent variables. Those models included FC and spatial features, together and alone. ResultsThe effect size comparisons did not survive FDR correction. However, exploratory permutation tests show that 1) the magnitude of the correlations with depression are larger on average for the intersection estimates of FC than the group estimates; and 2) the magnitude of the correlations with a ruminative coping style are larger on average for the intersection estimates of FC than the personalized estimate. The other comparisons conducted using permutation tests are not significant. Multiple regression analyses demonstrated that only spatial features of networks, not FC, are associated with sensitivity to reward. DiscussionThese results imply that the intersection estimates are more valid than the group estimates, and that the intersection estimates have greater predictive utility than personalized estimates. Further, spatial features of networks may be useful in and of themselves in certain contexts. Therefore, researchers in psychiatry should take into consideration spatial features of networks to gain a better understanding of the neurobiology underlying psychopathology.

neuroscience↗

FlywheelTools: Data Curation and Manipulation on the Flywheel Platform

The recent and growing focus on reproducibility in neuroimaging studies has led many major academic centers to use cloud-based imaging databases for storing, analyzing, and sharing complex imaging data. Flywheel is one such database platform that offers easily accessible, large-scale data management, along with a framework for reproducible analyses through containerized pipelines. The Brain Imaging Data Structure (BIDS) is a data storage specification for neuroimaging data, but curating neuroimaging data into BIDS can be a challenging and time-consuming task. In particular, standard solutions for BIDS curation are not designed for use on cloud-based systems such as Flywheel. To address these challenges, we developed "FlywheelTools", a software toolbox for reproducible data curation and manipulation on Flywheel. FlywheelTools includes two elements: fw-heudiconv, for heuristic-driven curation of data into BIDS, and flaudit, which audits and inventories projects on Flywheel. Together, these tools accelerate reproducible neuroscience research on the widely used Flywheel platform.

bioinformatics↗

Statistical Pitfalls in Brain Age Analyses

Over the past decade, there has been an abundance of research on the difference between age and age predicted using brain features, which is commonly referred to as the "brain age gap". Researchers have identified that the brain age gap, as a linear transformation of an out-of-sample residual, is dependent on age. As such, any group differences on the brain age gap could simply be due to group differences on age. To mitigate the brain age gaps dependence on age, it has been proposed that age be regressed out of the brain age gap. If this modified brain age gap (MBAG) is treated as a corrected deviation from age, model accuracy statistics such as R2 will be artificially inflated. Given the limitations of proposed brain age analyses, further theoretical work is warranted to determine the best way to quantify deviation from normality. HighlightsO_LIThe brain age gap is an out-of-sample residual, and as such varies as a function of age. C_LIO_LIA recently proposed modification of the brain age gap, designed to mitigate the dependence on age, results in inflated model accuracy statistics if used incorrectly. C_LIO_LIGiven these limitations, we suggest that new methods should be developed to quantify deviation from normal developmental and aging trajectories. C_LI

neuroscience↗