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Butala, M.

Publications and source records attributed to Butala, M..

2 recordsLinked to original sources

A mini-TGA protein, lacking a functional DNA-binding domain, modulates gene expression through heterogeneous association with transcription factors

TGA transcription factors, which bind their target DNA through a conserved basic region leucine zipper (bZIP) domain, are vital regulators of gene expression in salicylic acid (SA)-mediated plant immunity. Here, we investigate the role of StTGA2.1, a potato TGA lacking the full bZIP, which we name a mini-TGA. Such truncated proteins have been widely assigned as loss-of-function mutants. We, however, confirm that StTGA2.1 overexpression compensates for SA-deficiency. To understand the underlying mechanisms, we show that StTGA2.1 can physically interact with StTGA2.2 and StTGA2.3, while its interaction with DNA was not detected. We investigate the changes in transcriptional regulation due to StTGA2.1 overexpression, identifying direct and indirect target genes. Using in planta transactivation assays, we confirm that StTGA2.1 interacts with StTGA2.3 to activate StPRX07, a member of class III peroxidases, which are known to play role in immune response. Finally, via structural modelling and molecular dynamics simulations, we hypothesise that the compact molecular architecture of StTGA2.1 distorts DNA conformation upon heterodimer binding to enable transcriptional activation. This study demonstrates how protein truncation can lead to novel functions and that such events should be studied carefully in other protein families.

plant biology↗

The small DdrR protein directly interacts with the UmuDAb regulator to inhibit the mutagenic DNA damage response in Acinetobacter baumannii

Acinetobacter baumannii poses a great threat in healthcare settings worldwide with clinical isolates revealing an ever evolving multidrug-resistance. Here, we report the molecular mechanisms governing the tight repression of the error-prone DNA polymerase umuDC genes in this important bacterial human pathogen. We demonstrate that the small DdrR protein directly interacts with the UmuDAb transcription repressor, which possesses some similarities to LexA proteins from other bacteria, to increase the repressors affinity for target sequences in the umuDC operon. These data reveal that DdrR forms a stable complex with free UmuDAb but is released upon association of this repressor complex with target DNA. We show that DdrR also interacts with UmuD, a component of DNA polymerase V and that DdrR enhances the operator binding of LexA repressors from Clostridium difficile, Bacillus thuringiensis and Staphylococcus aureus. Our results suggest that proteins that assist the action of LexA-like transcription factors may be common to many, if not all, bacteria that mount the SOS response.

biochemistry↗