Bunner, W. P. | bioRxiv Science

bioRxiv2022

CRY-BARs: Versatile light-gated molecular tools for the remodeling of membrane architectures

BAR (Bin, Amphiphysin and Rvs) protein domains are responsible for the generation of membrane curvature and represent a critical mechanical component of cellular functions. Thus, BAR domains have great potential as components of membrane-remodeling tools for cell biologists. In this work, we describe the design and implementation of a family of versatile light-gated I-BAR domain containing tools ( CRY-BARs) with applications in the remodeling of membrane architectures and the control of cellular dynamics. By taking advantage of the intrinsic membrane binding propensity of the I-BAR domain, CRY-BARs can be used for spatial and temporal control of cellular processes that require induction of membrane protrusions. Using cell lines and primary neuron cultures, we demonstrate that the CRY-BAR optogenetic tool reports membrane dynamic changes associated with cellular activity. Moreover, we provide evidence that Ezrin acts as a relay between the plasma membrane and the actin cytoskeleton and therefore is an important mediator of switch function. Overall, CRY-BARs hold promise as a useful addition to the optogenetic toolkit to study membrane remodeling in live cells.

cell biology↗

bioRxiv2019

CofActor: A light and redox-gated optogenetic clustering tool to study abnormal cytoskeletal dynamics in stressed cells

The biochemical hallmarks of neurodegenerative diseases (neural fibrils, clumps, and tangles; heightened reactive oxygen species (ROS); cofilin-actin rods) have presented numerous challenges for development of in vivo diagnostic tools (1-7). Biomarkers such as amyloid beta (A{beta}) fibrils and Tau tangles in Alzheimers Disease (AD) are only accessible via invasive cerebrospinal fluid assay for peptide mass fingerprinting or post-mortem diagnosis (8-11), while ROS can be fleeting and thus challenging to monitor in vivo (12-15). While remaining a challenge for in vivo detection, the unique protein-protein interactions underlying these disease-specific biomarkers also present rich opportunities for the engineering of in vitro pathology-sensitive biosensors and bioactuators. These tools can be useful for the investigation of critical, early stage events in neurodegenerative diseases in both cellular and animal models (16, 17), while potentially leading to advanced detection reagents with clinical applications. In this report, we describe a light and redox-gated protein switch inspired by the phenomenon of cofilin-actin rod formation, which occurs in stressed neurons in the AD brain and following brain ischemia (18). By coupling the redox-sensitive interaction of cofilin and actin with the light responsive Cry2-CIB blue light switch, we accomplish both light- and ROS-gated control of this interaction. The resulting switch is referred to as the "CofActor" system. Site-directed mutagenesis of both cofilin and actin partners demonstrate which residues are critical for sustaining or abrogating the light and redox gated response. Furthermore, switch response varies depending on whether oxidative stress is generated via glycolytic inhibition or a combination of glycolytic inhibition and azide-induced oxidative stress. Finally, light and redox gated switch function was demonstrated in cultured hippocampal neurons. As a dual input biosensor, CofActor holds promise for the tracking of early stage events in neurodegeneration and the investigation of actin-binding protein interactions under oxidative stress.

neuroscience↗