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Bucakci, A.

Publications and source records attributed to Bucakci, A..

2 recordsLinked to original sources

Targeting mitochondria mitigates chemotherapy-induced bone marrow dysfunction

Chemotherapy has revolutionized cancer treatment but its long-term impact on healthy tissues, particularly the rapidly dividing hematopoietic system, remains a significant concern. We show that the chemotherapeutic agent 5-fluorouracil (5-FU) causes significant long-term defects of the hematopoietic system that mimics ageing, including myeloid lineage skewing and hematopoietic stem cell (HSC) dysfunction. Importantly, chemotherapy exposed HSCs remain in an inflammatory state coupled with mitochondrial dysfunction, both of which are implicated in ageing and MDS development. Remarkably, five days of MitoQ treatment fully reversed 5-FU-induced myeloid skewing and caused significant recovery of HSC transcriptome and function in a stable manner. Thus, our results demonstrate that repeated chemotherapy induces long-term bone marrow dysfunction driven by metabolically unfit HSCs that can be pharmacologically rescued. This work opens up novel avenues to explore supportive treatment for patients undergoing any type of myelo-ablative chemotherapy. HighlightsO_LICommonly used chemotherapy drugs cause stable lineage-specific cytopenias despite recovery of total blood counts. C_LIO_LI5-FU-induced hematopoietic dysfunction phenocopies premature hematopoietic ageing. C_LIO_LIChemotherapy-induced changes stem from HSCs that are self-renewal competent but differentiation incompetent. C_LIO_LIMitochondrial-targeted treatment rescues 5-FU-induced myeloid bias through correction of HSC transcriptome and function. C_LI

cell biology↗

Dynamic Runx1 chromatin boundaries affect gene expression in hematopoietic development

The transcription factor RUNX1 is a critical regulator of developmental hematopoiesis and is frequently disrupted in leukemia. Runx1 is a large, complex gene that is expressed from two alternative promoters under the spatiotemporal control of multiple hematopoietic enhancers. To dissect the dynamic regulation of Runx1 in hematopoietic development, we analyzed its three-dimensional chromatin conformation in mouse embryonic stem cell (ESC) differentiation cultures. Runx1 resides in a 1.1 Mb topologically associating domain (TAD) demarcated by convergent CTCF motifs. As ESCs differentiate to mesoderm, chromatin accessibility, Runx1 enhancer-promoter (E-P) interactions, and CTCF-CTCF interactions increased in the TAD, along with initiation of Runx1 expression from the P2 promoter. Differentiation to hematopoietic progenitor cells was associated with the formation of tissue-specific sub-TADs over Runx1, a shift in E-P interactions, P1 promoter demethylation, and robust expression from both Runx1 promoters. Deletions of promoter-proximal CTCF sites at the sub-TAD boundaries had no obvious effects on E-P interactions but led to partial loss of domain structure, mildly affected gene expression, and delayed hematopoietic development. Together, our analyses of gene regulation at a large multi-promoter developmental gene revealed that dynamic sub-TAD chromatin boundaries play a role in establishing TAD structure and coordinated gene expression.

developmental biology↗