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Brown, C. R. P.

Publications and source records attributed to Brown, C. R. P..

2 recordsLinked to original sources

Simplifying species interaction matrices by grouping: optimal groupings differ between effects and responses

Most ecological models of species interactions require many parameters, making them expensive to fit to experimental or observational data. To reduce the number of parameters, species are often divided into groups a priori, for example on the basis of functional or phylogenetic similarity, and species within these groups are assumed to behave identically. Here, we assess the validity of such grouping by deriving the optimal groupings a posteriori based on the fit of the Beverton-Holt model to experimental data from six species of Drosophila competing in laboratory conditions. We find evidence that grouping can indeed improve the performance (as judged by AICc) of species-interaction models, but we also observe that there is no single optimal grouping. Further, those groupings that did prove beneficial could not have been easily predicted from available species attributes, calling into question the prevailing method of a priori species grouping. Lastly, we find that species did not group equivalently in their competitive effect and in their response to competition, invalidating a key assumption often made implicitly when defining species groupings. Our study suggests the need for a different, more data-informed, approach to grouping in species-interaction models.

ecology↗

Evolution and evolvability of rifampicin resistance across the bacterial tree of life

Predicting the ability of bacteria to develop antibiotic resistance is challenging, especially for the vast majority of species for which no experimental data are available. Here, we investi-gated the evolvability and intrinsic presence of rifampicin resistance across the bacterial tree of life. We compiled a panel of known rifampicin resistance mutations, comprising 60 amino acid substitutions within the gene rpoB. We then screened > 18 000 genomes from all major bac-terial groups for the presence of those mutations and determined which mutations can evolve through point mutations. Our results demonstrate that although the evolvability of individual mutations varies considerably across species, overall predicted evolvability is high and relatively homogeneous across bacterial taxa. Rifampicin resistance mutations are present intrinsically in 8% of species. Our analysis provides a global picture of the mutational landscape of rifampicin resistance, including both insight into existing observations as well as predictions informing future work.

evolutionary biology↗