bioRxiv Science⌕ Search

Biology subjects

Brito, J.

Publications and source records attributed to Brito, J..

10 recordsLinked to original sources

Rethinking the movement ecology of Andean bears: temperature-driven cathemerality and seasonal space-use cycles

BackgroundThe Andean bear (Tremarctos ornatus), South Americas only ursid, is one of the worlds most elusive large mammals, making movement data collection exceptionally rare. Addressing this gap, we present the largest telemetry dataset ever assembled, spanning 19 individuals tracked across three Ecuadorian National Parks over two decades, paired with a novel analytical approach. MethodsWe integrated Continuous-Time Movement Models (CTMM), Auto-correlated Kernel Density Estimates (AKDEs), Hidden Markov Models (HMM) and a diel niche theoretical framework to mitigate biases previously unaccounted for the species in telemetry studies. Fine-scale AKDEs and non-linear movement metrics were calculated to understand seasonal space use and movement behaviors. Speed and diffusion from CTMM and behavioral states from HMM were modelled with environmental covariates to investigate which conditions shape diel and seasonal activity. ResultsPopulation mean home range was 138.2 km2 (95% Confidence Intervals 78.7-225.5), with males (239.8 km2, 182.8-307.5), significantly exceeding females (58.5 km2, 35.5-90.3). Notably, three females exhibited ranges comparable to some males. Weekly and monthly AKDEs uncovered cyclic home range dynamics potentially driven by resource availability, with contractions around corn harvests and berry seasons, and expansions during paramo transitions. Decoupling speed from diffusion rates showed region-specific behaviors: intensive patch exploitation in Llanganates, broad exploratory ranging in Cayambe-Coca, and suppressed female locomotion in Cotacachi-Cayapas. Statistical analyses identified temperature as a key diel modulator and precipitation as the seasonal driver. Foraging probability increased between 2:00-6:00, large displacements between 7:00-14:00, and nocturnal movement rose significantly under colder conditions. Across diel hypothesis frameworks, bears were classified as cathemeral rather than strictly diurnal, corroborated by camera-trap records from Colombia, Ecuador, and Peru. ConclusionsWe propose a cathemeral diel phenotype that responds to thermal fluctuations and situates Andean bears within a broader ursid context of thermoregulatory niche plasticity. This dataset reveals unprecedented resolution of regional and sex specific behaviors that will facilitate and accelerate comparative studies in rapidly changing Andean landscapes. By releasing this long-term dataset as an open resource, we provide a foundation for climate-resilient conservation strategies. More broadly, we advocate for data democratization and invite collaboration.

ecology↗

Diet of the Great Horned Owl Bubo virginianus nigrescens (Strigiformes: Strigidae) in the Northern Andes of Ecuador and a Literature Review of the Subspecies Dietary Patterns

Understanding the feeding ecology of top avian predators is crucial to unravelling trophic interactions and informing conservation strategies. Great Horned Owl Bubo virginianus, among the most widespread nocturnal raptors in America, remains understudied in the northern Andes. We investigated the diet of the subspecies B. v. nigrescens in an inter-Andean valley of northern Ecuador and compiled a literature review of its dietary patterns. Fifty-four pellets collected from 2014 to 2017 yielded 106 prey items. Mammals constituted the primary food source in frequency and biomass, with the Andean White-eared Opossum Didelphis pernigra and Black Rat Rattus rattus dominating the total biomass. Smaller native and introduced rodents were also common, while birds, bats, frogs, and Scarabaeid beetles appeared less frequently, underscoring the owls generalist foraging. A new record of predation on a young domestic cat highlights its adaptability to urbanised landscapes. Our literature review reveals similar trends across Colombia and Ecuador, with mammalian prey--often lagomorphs in higher elevations--dominant throughout. These findings suggest that B. v. nigrescens exhibits a flexible feeding ecology, capitalising on native and non-native prey. However, shifting land-use practices may affect prey availability and pose future challenges for this apex predator. Year-round and multi-elevation studies would help clarify seasonal variation and broader ecological dynamics, guiding conservation efforts in tropical mountain ecosystems.

zoology↗

Delayed recovery of seed-dispersal interactions after deforestation

Interactions between plants and animals are crucial for natural forest recovery because most plants rely on seed dispersal by animals to recolonize degraded habitats. Despite this importance, the recovery time of seed-dispersal interactions after deforestation is unknown. We compared the recovery time of the functional diversity of seed-dispersal interactions, frugivorous animals and fleshy-fruited plants by recording trait and interaction data along a chronosequence of tropical forest recovery. Using a Bayesian model, we estimated that plant functional diversity was high shortly after deforestation, but animal functional diversity recovered only after 39 years, and seed-dispersal interactions after 18 years. We demonstrate that seed-dispersal interactions need about two decades to functionally recover which provides a new benchmark for the timing of restoration projects in tropical forests.

ecology↗

External and Internal Load Profiles of Male and Female Participants during a Walking Football Practice

BACKGROUNDHigh levels of sedentary behavior among older adults highlight the importance of walking football (WF) in promoting physical activity for healthy aging. This study examines the external and internal load profiles of male and female participants during a WF tournament, addressing a gap in research on game demands and induced load. METHODSThe study involved 176 players aged 50+ participating in a 40-min, 5v5 WF tournament with unlimited substitutions. External load (total and categorized distances) was measured using Global Positioning System (GPS), while heart rate (HR) monitors assessed internal load, including absolute HR and intensity zones based on %HRmax. RESULTSThe proportion of male participants (n=123; 70.3%) was higher than females (n=52; 29.7%), p<.001. They were similar in age (61.6{+/-}8.6 and 60.8{+/-}6.9, respectively). Males covered a higher distance per minute than females, with sex showing a moderate effect (63.3{+/-}10.7 m/min vs. 54.7{+/-}15.8 m/min; p < .001; Cohens dunbiased = 0.69 [0.36; 1.03]), especially in fast walking (41.7{+/-}12.2 m/min vs. 32.6{+/-}16.7 m/min; p < .001; Cohens dunbiased = 0.66 [0.33; 1.00]). Males played more time than females (22:26{+/-}09:47 min:ss vs. 15:41{+/-}07:46 min:ss; p<.001), with moderate effect (Cohens dunbiased = 0.73 [0.40; 1.06]). However, no differences between sexes were identified in the internal load variables, such that the female average %HRmax was 80{+/-}11% and the male was 82{+/-}8% during the practice. CONCLUSIONSOverall, while males generally exhibit higher external loads in WF, both sexes experience similar internal load demands, highlighting WFs potential as a scalable, health-promoting intervention for aging populations.

physiology↗

The search behavior of terrestrial mammals

Animals moving through landscapes need to strike a balance between finding sufficient resources to grow and reproduce while minimizing encounters with predators 1,2. Because encounter rates are determined by the average distance over which directed motion persists 1,3-5, this trade-off should be apparent in individuals movement. Using GPS data from 1,396 individuals across 62 species of terrestrial mammals, we show how predators maintained directed motion ~7 times longer than for similarly-sized prey, revealing how prey species must trade off search efficiency against predator encounter rates. Individual search strategies were also modulated by resource abundance, with prey species forced to risk higher predator encounter rates when resources were scarce. These findings highlight the interplay between encounter rates and resource availability in shaping broad patterns mammalian movement strategies.

ecology↗

TAMPA: interpretable analysis and visualization of metagenomics-based taxon abundance profiles

Metagenomic taxonomic profiling aims to predict the identity and relative abundance of taxa in a given whole genome sequencing metagenomic sample. A recent surge in computational methods that aim to accurately estimate taxonomic profiles, called taxonomic profilers, have motivated community driven efforts to create standardized benchmarking datasets and platforms, standardized taxonomic profile formats, as well as a benchmarking platform to assess tool performance. While this standardization is essential, there is currently a lack of tools to visualize the standardized output of the many existing taxonomic profilers, and benchmarking studies rely on a single value metrics to compare performance of tools and compare to benchmarking datasets. Here we report the development of TAMPA (Taxonomic metagenome profiling evaluation), a robust and easy-to-use method that allows scientists to easily interpret and interact with taxonomic profiles produced by the many different taxonomic profiler methods beyond the standard metrics used by the scientific community. We demonstrate the unique ability of TAMPA to provide important biological insights into the taxonomic differences between samples otherwise missed by commonly utilized metrics. Additionally, we show that TAMPA can help visualize the output of taxonomic profilers, enabling biologists to effectively choose the most appropriate profiling method to use on their metagenomics data. TAMPA is available on GitHub, Bioconda and Galaxy Toolshed at https://github.com/dkoslicki/TAMPA, and is released under the MIT license.

bioinformatics↗

Home range and movement patterns of the Andean Fox Lycalopex culpaeus (Molina 1782) in Cotopaxi National Park, Ecuador

This study reports movement patterns and home range estimates of an Andean fox (Lycalopex culpaeus) in Cotopaxi National Park in Ecuador, representing the first GPS-tagging of the species. The GPS functioned well during the 197-day tracking period. Home range sizes ranged between 4.9 - 8.1 km2, depending on the estimation method. Movement speeds averaged 0.17 km/hr at day vs. 0.87 km/hr. at night, and distance traveled averaged 0.23 km at day vs. 0.89 km at night. These preliminary results highlight the importance of collecting unbiased, high-quality data which enables an enhanced understanding on mammal behavior and human/animal interaction.

animal behavior and cognition↗

Intra-individual variability of sleep and nocturnal cardiac autonomic activity in elite female soccer players during an international tournament

PurposeThis study provides insights into the individual sleep patterns and nocturnal cardiac autonomic activity responses of elite female soccer players during an international tournament.\n\nMaterials and methodsTwenty elite female soccer players (aged 25.2{+/-}3.1 years) wore wrist actigraph units and heart rate (HR) monitors during night-sleep throughout 9 consecutive days (6 day-time training sessions [DT], 2 day-time matches [DM], and 1 evening-time match [EM]) of an international tournament. Training and match loads were monitored using the session-rating of perceived exertion (s-RPE) and wearable 18-Hz GPS (total distance covered [TD], training and match exposure time, and high-speed running [HSR]) to characterize training and match loads.\n\nResultsIndividually, s-RPE, TD, exposure time, and HSR during training sessions ranged from 20 to 680 arbitrary units (AU), 892 to 5176 m, 20 to 76 min, and 80 to 1140 m, respectively. During matches, s-RPE, TD, exposure time, and HSR ranged from 149 to 876 AU, 2236 to 11210 m, 20 to 98 min, and 629 to 3213 m, respectively. Individually, players slept less than recommended (<7 hours) on several days of the tournament, especially after EM (n=8; TST ranging between 6:00-6:54 h). Total sleep time coefficient of variation (CV) ranged between 3.1 and 18.7%. However, all players presented good sleep quality (i.e., sleep efficiency [&ge;]75%; individual range between: 75-98%) on each day of the tournament. Most of the players presented small fluctuations in nocturnal cardiac autonomic activity (individual nocturnal heart rate variability [HRV] ranged from 3.91-5.37 ms and HRV CV ranged from 2.8-9.0%), while two players presented higher HRV CV (11.5 and 11.7%; respectively).\n\nConclusionOverall, elite female soccer players seemed to be highly resilient to training and match schedules and loads during a 9 day international tournament.

physiology↗

A comprehensive analysis of the usability and archival stability of omics computational tools and resources

Developing new software tools for analysis of large-scale biological data is a key component of advancing modern biomedical research. Scientific reproduction of published findings requires running computational tools on data generated by such studies, yet little attention is presently allocated to the installability and archival stability of computational software tools. Scientific journals require data and code sharing, but none currently require authors to guarantee the continuing functionality of newly published tools. We have estimated the archival stability of computational biology software tools by performing an empirical analysis of the internet presence for 36,702 omics software resources published from 2005 to 2017. We found that almost 28% of all resources are currently not accessible through URLs published in the paper they first appeared in. Among the 98 software tools selected for our installability test, 51% were deemed \"easy to install,\" and 28% of the tools failed to be installed at all due to problems in the implementation. Moreover, for papers introducing new software, we found that the number of citations significantly increased when authors provided an easy installation process. We propose for incorporation into journal policy several practical solutions for increasing the widespread installability and archival stability of published bioinformatics software.

bioinformatics↗

MRI-related anxiety in healthy individuals, intrinsic BOLD oscillations at 0.1 Hz and heart rate variability in low frequency bands

Participation in a MRI scan is associated with increased anxiety, thus possibly impacting baseline recording for functional MRI studies. We investigated in 23 healthy individuals without any former MRI experience (scanner-naive) the relations between anxiety, 0.1-Hz BOLD oscillations and heart rate variability (HRV) in two separate resting state sessions (R1, R2). BOLD signals were recorded from precentral gyrus (PCG) and insula in both hemispheres. Phase-locking and time delays were computed in the frequency band 0.07-0.13 Hz. Positive (pTD) and negative time delays (nTD) were found. The pTD characterize descending neural BOLD oscillations spreading from PCG to insula and nTD characterize ascending vascular BOLD oscillations related to blood flow in the middle cerebral artery. HRV power in two low frequency bands 0.06-0.1 Hz and 0.1-0.14 Hz was computed. Based on the drop rate of the anxiety level from R1 to R2, two groups could be identified: one with a strong anxiety decline (large drop group) and one with a moderate decline or even anxiety increase (small drop group). A significant correlation was found only between the left-hemispheric time delay (pTD, nTD) of BOLD oscillations and anxiety drop, with a dominance of nTD in the large drop group. The analysis of within-scanner HRV revealed a pronounced increase of low frequency power between both resting states, dominant in the band 0.06-0.1 Hz in the large drop group and in the band 0.1-0.14 Hz in the small drop group. These results suggest different mechanisms related to anxiety processing in healthy individuals. One mechanism (large drop group) could embrace an increase of blood circulation in the territory of the left middle cerebral artery (vascular BOLD) and another (small drop group) translates to rhythmic central commands (neural BOLD) in the frequency band 0.1-0.14 Hz.

neuroscience↗