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Boutant, E.

Publications and source records attributed to Boutant, E..

6 recordsLinked to original sources

Characterisation of Pseudomonas aeruginosas metal-responsive TonB-dependent transporters

Pseudomonas aeruginosa, a versatile bacterium, relies on several TonB-dependent transporters (TBDTs) for nutrient acquisition (such as iron-siderophore complexes) and adaptation to various environments. While some TBDTs are well characterized, a significant number remain unexplored despite their potential role in pathogenicity. In this study, we developed fluorescent reporter plasmids to investigate TBDT promoter activity. Initially, we characterized their promoter activity in commonly used laboratory conditions, revealing diverse expression patterns among all TBDTs. Subsequently, we classified the TBDTs into distinct metal-responsive groups based on their stress-responsive behaviour, shedding light on their functional roles. Additionally, we show that these reporter constructs can be used as a powerful tool for siderophore detection. Finally, single cell analysis of TBDT promoter activity during coculture with an enterobactin-producing Klebsiella pneumoniae strain shows homogenous expression of key TBDT in P. aeruginosa. Our findings provide valuable insights into the expression profiles and functional diversity of P. aeruginosa TBDTs in complex conditions, reaching from commonly used lab media to complex co-culturing conditions.

microbiology↗

dsRNA-induced immunity targets plasmodesmata and is suppressed by viral movement proteins

Emerging evidence indicates that in addition to the well-recognized antiviral RNA silencing, dsRNA elicits responses of pattern-triggered immunity (PTI), likely contributing plant resistance against virus infections. However, compared to bacterial and fungal elicitor-mediated PTI, the mode-of-action and signaling pathway of dsRNA-induced defense remain poorly characterized. Here, using multi-color in vivo imaging by GFP mobility, staining of callose and plasmodesmal marker lines, we show that dsRNA-induced PTI restricts the progression of virus infection by triggering callose deposition at plasmodesmata, thereby likely limiting the macromolecular transport through these cell-to-cell communication channels. The plasma membrane-resident kinase module of SERK1 and BIK1/PBL1, plasmodesmata-localized proteins PDLP1/2/3 and calmodulin-like CML41, and Ca2+ signals are involved in the dsRNA-induced signaling leading to callose deposition at plasmodesmata and antiviral defense. In addition, unlike classical bacterial elicitor flagellin, dsRNA does not trigger detectable reactive oxygen species (ROS) burst, further substantiating a partially shared immune signaling framework with distinct features triggered by different microbial patterns. Likely as a counteract strategy, viral movement proteins from different viruses suppress the dsRNA-induced host response leading to callose deposition to achieve infection. Thus, our data support the new model of how plant immune signaling constrains the virus movement by inducing callose deposition at plasmodesmata and how viruses counteract this layer of immunity. One-sentence summarydsRNA-induced antiviral PTI targets plasmodesmata for callose deposition and is suppressed by virus-encoded movement proteins. IN A NUTSHELLO_ST_ABSBackgroundC_ST_ABSPlants use different defense mechanisms pathogens. The major mechanism that plants use for defense against viruses is known as RNA silencing. This mechanism is triggered by the presence of viral double-stranded (ds)RNA and uses small RNAs to inhibit viral replication by targeting the viral genome for degradation. Recently, it was found that dsRNA elicits antiviral defense also through a protein-mediated mechanism known as pattern-triggered immunity (PTI). However, the underlying mechanism of antiviral PTI and how viruses overcome this plant defense mechanism to cause infection is unknown. QuestionIn this study we asked how dsRNA-induced PTI acts to inhibit virus infection and whether we can identify components of the PTI signaling pathway. Moreover, we wanted to know how viruses overcome this plant host defense response in order to cause infection. FindingsWe demonstrate that dsRNA-induced PTI targets plasmodesmata (PD), the intercellular communication conduits in plant cell walls that viruses use to spread infection from cell to cell. By inducing the deposition of callose, dsRNA-induced PTI reduces PD permeability, thus restricting virus movement. We identified PTI signaling components required for dsRNA-induced PD callose deposition and delineate a PTI pathway showing important difference to PTI pathways triggered by microbial elicitors. Moreover, viral movement proteins (MPs) suppress the dsRNA-induced callose deposition response at PD. This leads to a new model of how plant immune signaling constrains virus movement and how viruses counteract this layer of immunity. Next stepsThis study calls upon the identification of the PTI dsRNA receptor and the mechanisms of PTI signaling (involving identified components such as SERK1, BIK1, calcium channels, CML41, PDLP1/2/3) and PTI suppression by MPs, and how dsRNA-induced PTI and RNA silencing are controlled during the spread of infection.

plant biology↗

Suppression of a dsRNA-induced plant immunity pathway by viral movement protein

The virome of plants is dominated by RNA viruses 1 and several of these cause devastating diseases in cultivated plants leading to global crop losses 2. To infect plants, RNA viruses engage in complex interactions with compatible plant hosts. In cells at the spreading infection front, RNA viruses replicate their genome through double-stranded RNA (dsRNA) intermediates and interact with cellular transport processes to achieve cell-to-cell movement of replicated genome copies through cell wall channels called plasmodesmata (PD) 3. In order to propagate, viruses also must overcome host defense responses. In addition to triggering the antiviral RNA silencing response, RNA virus infection also elicits pattern-triggered immunity (PTI) 4 whereby dsRNA, a hallmark of virus replication, acts as an important elicitor 5. This innate antiviral immune response is also triggered when dsRNA is applied externally and does not require sequence homology to the virus 5. However, the mechanism by which PTI restricts virus infection is not known. Here, we show that dsRNA inhibits the progression of virus infection by triggering callose deposition at plasmodesmata and the inhibition of transport through these cell-to-cell communication channels. The dsRNA-induced signaling pathway leading to callose deposition is independent of ROS production and thus distinguished from pathways triggered by bacterial and fungal elicitors. The dsRNA-induced host response at plasmodesmata is suppressed by the Tobacco mosaic virus movement protein (MP). Thus, the virus uses MP to inhibit innate dsRNA-induced immunity at plasmodesmata, which could be a general strategy of phytoviruses to overcome plant defenses and spread infection.

plant biology↗

The two zinc fingers in the nucleocapsid domain of the HIV-1 Gag precursor are equivalent for the interaction with the genomic RNA in the cytoplasm, but not for the recruitment of the complexes at the plasma membrane

The HIV-1 Gag precursor specifically selects the unspliced viral genomic RNA (gRNA) from the bulk of cellular and spliced viral RNAs via its nucleocapsid (NC) domain and drives gRNA encapsidation at the plasma membrane (PM). To further identify the determinants governing the intracellular trafficking of Gag-gRNA complexes and their accumulation at the PM, we compared, in living and fixed cells, the interactions between gRNA and wild-type (WT) Gag or Gag mutants carrying deletions in NC zinc fingers (ZFs), or a non-myristoylated version of Gag. Our data showed that the deletion of both ZFs simultaneously or the complete NC domain completely abolished intracytoplasmic Gag-gRNA interactions. Deletion of either ZF delayed the delivery of gRNA to the PM but did not prevent Gag-gRNA interactions in the cytoplasm, indicating that the two ZFs display redundant roles in this respect. However, ZF2 played a more prominent role than ZF1 in the accumulation of the ribonucleoprotein complexes at the PM. Finally, the myristate group which is mandatory for anchoring the complexes at the MP, was found to be dispensable for the association of Gag with the gRNA in the cytosol. STATEMENT of SIGNIFICANCEFormation of HIV-1 retroviral particles relies on specific interactions between the retroviral Gag precursor and the unspliced genomic RNA (gRNA). During the late phase of replication, Gag orchestrates the assembly of newly formed viruses at the plasma membrane (PM). It has been shown that the intracellular HIV-1 gRNA recognition is governed by the two-zinc finger (ZF) motifs of the nucleocapsid (NC) domain in Gag. Here we provided a clear picture of the role of ZFs in the cellular trafficking of Gag-gRNA complexes to the PM by showing that either ZF was sufficient to efficiently promote these interactions in the cytoplasm, while interestingly, ZF2 played a more prominent role in the relocation of these ribonucleoprotein complexes at the PM assembly sites.

biophysics↗

Molecular Tuning of Styryl Dyes Leads to Versatile and Efficient Plasma Membrane Probes for Cell and Tissue Imaging

The plasma membrane (PM) plays a major role in many biological processes; therefore its proper fluorescence staining is required in bioimaging. Among the commercially available PM probes, styryl dye FM1-43 is one of the most widely used. In this work, we demonstrated that fine chemical modifications of FM1-43 can dramatically improve the PM staining. The newly developed probes, SP-468 and SQ-535 were found to display enhanced photophysical properties (reduced crosstalk, higher brightness, improved photostability) and unlike FM1-43, provided excellent and immediate PM staining in 5 different mammalian cell lines including neurons (primary culture and tissue imaging). Additionally, we showed that the new probes displayed differences in their internalization pathways compared to their parent FM1-43. Finally, we demonstrated that the modifications made to FM1-43 did not impair the ability of the new probes to stain the PM of plant cells. Overall, this work presents new useful probes for PM imaging in cells and tissues and provides insights on the molecular design of new PM targeting molecules.

molecular biology↗

MemBright: a Family of Fluorescent Membrane Probes for Advanced Cellular Imaging and Neuroscience

The proper staining of the plasma membrane (PM) is critical in bioimaging as it delimits the cell. Herein, we developed MemBright: a family of six cyanine-based fluorescent turn-on PM probes that emit from orange to near-infrared when reaching the PM, and enable homogeneous and selective PM staining with excellent contrast in mono and two-photon microscopy. These probes are compatible with long-term live cell imaging and immunostaining. Moreover, MemBright label neurons in a brighter manner than surrounding cells allowing identification of neurons in acute brain tissue section and neuromuscular-junctions without any use of transfection or transgenic animals. At last, MemBright were used in super-resolution imaging to unravel the dendritic spines neck. 3D multicolor dSTORM in combination with immunostaining revealed en-passant synapse displaying endogenous glutamate receptors clustered at the axonal-dendritic contact site. MemBright probes thus constitute a universal toolkit for cell biology and neuroscience biomembrane imaging with a variety of microscopy techniques.

neuroscience↗