Biology subjects

Boukhatmi, H.

Publications and source records attributed to Boukhatmi, H..

6 recordsLinked to original sources

bioRxiv2026

Delta/Notch signaling level is decoded through transcriptional burst duration during muscle progenitor specification

The ability of progenitor cells to interpret different levels of signaling pathway activity is fundamental to the generation of cellular diversity during development. Muscle progenitors, for example, are exposed to different levels of signals from their microenvironment. However, how they decode these quantitative differences to regulate their cellular behaviors during myogenesis remains poorly understood. Here, we addressed this question during the specification of two populations of Drosophila adult muscle progenitors (AMPs). We found that, despite being spatially adjacent, indirect flight muscle (IFM) and direct flight muscle (DFM) progenitors receive distinct levels of Notch signaling. We further show that the spatial distribution of epithelial Delta contributes to differential Notch activation. Higher Delta levels adjacent to IFM progenitors promote stronger Notch signaling. To investigate how these quantitative differences are translated into transcriptional responses, we developed a Notch-responsive MS2 reporter to monitor transcription in living AMPs. Our measurements reveal that Notch-dependent transcription occurs in stochastic bursts, with IFM progenitors displaying longer but less frequent bursts than DFM progenitors. Strikingly, equalizing epithelial Delta levels abolished differences between the two populations in both Notch-dependent transcriptional activity and the protein levels of Notch target genes. Together, our findings suggest that quantitative differences in signaling may be translated into distinct transcriptional outputs through modulation of transcriptional bursting. This may represent a mechanism by which a single signaling pathway can be deployed to regulate diverse cellular responses during development.

developmental biology↗

bioRxiv2026

Cancer cachexia overrides sex-specific traits in Drosophila

Cancer cachexia, a metabolic syndrome characterized by pathologic weight loss, dramatically limits therapeutic options and reduces survival. While the mechanisms by which tumors induce wasting of distant organs (particularly muscle and adipose tissues) remain incompletely understood, the influence of biological sex on cachexia progression is even less clear. Here we investigated phenotypic and molecular manifestations of cachexia in both sexes using a model of inducible intestinal tumors in Drosophila. We show that tumor progression leads to the development of severe cachexia both in males and in females manifested by organ atrophies and an inflammatory state. Nevertheless, both phenotypical and molecular cachexic alterations exhibit striking differences between sexes. Transcriptomic analysis show that many genes differentially expressed at high levels in males under normal conditions become downregulated during cachexia, while their expression is upregulated in cachexic females, and reciprocally. Together, sex-specific deregulation in gene expression and metabolic profiles ultimately converge towards a molecular cachexic state that erase or diminish many sex-specific differences otherwise characteristic of healthy males and females. These findings highlight the interplay between oncogenic stress and biological sex in shaping cachexia phenotypes, shedding light on how sex influences the development of cancer cachexia.

developmental biology↗

bioRxiv2026

SPARC mediates tumour-stroma intercellular communication through endosomal regulation of Delta and Notch signalling

Tumour progression relies on reciprocal communication between genetically altered cancer cells and surrounding stromal cells. While the genetic alterations that initiate tumorigenesis have been extensively studied, the dysregulated feedback signalling provided by co-opted stromal cells remains poorly understood. Here, we used a Drosophila cancer model to address this question and identified the matricellular protein SPARC as a mediator of tumour-stroma communication. SPARC is produced by mesenchymal cells and transferred into epithelial tumour cells, where it is internalized through the endocytic pathway. Following uptake, SPARC accumulates in Rab7 positive late endosomes and colocalize with the Notch ligand Delta. SPARC internalization promotes endosomal enlargement and reduces endosome dynamics. Increased SPARC levels in epithelial tumours indirectly attenuate Notch signalling activity through at least altered Delta trafficking. We further identify the N-terminal acidic domain of SPARC as specifically required for its targeting to Delta-associated endosomes. Together, our findings uncover a stromal feedback mechanism by which SPARC modulates Notch signalling through endosomal regulation during tumour development.

developmental biology↗

bioRxiv2025

Immune tracheal intercellular signalling coordinates the muscle injury response in Drosophila

In skeletal muscle, immune and vascular responses are essential for regeneration, yet the cellular and molecular mechanisms that coordinate their activities to restore tissue function remain unclear. Here, using Drosophila, we uncover a multi-organ signaling program that integrates muscle fibers, macrophages, vascular-like tracheal cells, and the extracellular matrix (ECM) to maintain muscle function in response to acute damage. Muscle injury induces rapid macrophage recruitment and secretion of the FGF-like ligand Branchless (Bnl), which activates FGF/FGFR signalling in tracheal cells and promotes their targeted expansion toward damaged muscle. Concomitantly, macrophages deposit ECM components on the damaged muscle, including Collagen IV, forming a localized microenvironment that restricts Bnl ligand diffusion and facilitates directed tracheal remodelling. Genetic disruption of macrophage-derived Bnl or macrophage-mediated ECM deposition abolishes tracheal remodelling and compromises muscle function following injury. Together, these findings reveal a novel immune-vascular communication program in which macrophages coordinate fibroblast growth factor signalling and ECM organization to shape muscle microenvironment and preserve muscle function following acute damage.

developmental biology↗

bioRxiv2022

N-terminal acetylation shields proteins from degradation and promotes age-dependent motility and longevity

Most eukaryotic proteins are N-terminally acetylated, but the functional impact on a global scale has remained obscure. Using genome-wide CRISPR knockout screens in human cells, we reveal a strong genetic dependency between a major N-terminal acetyltransferase and specific ubiquitin ligases. Biochemical analyses uncover that both the ubiquitin ligase complex UBR4-KCMF1 and the acetyltransferase NatC recognize proteins bearing an unacetylated N-terminal methionine followed by a hydrophobic residue. NatC KO-induced protein degradation and phenotypes are reversed by UBR knockdown, demonstrating the central cellular role of this interplay. We reveal that loss of Drosophila NatC is associated with male sterility, reduced longevity, and age-dependent loss of motility due to developmental muscle defects. Remarkably, muscle-specific overexpression of UbcE2M, one of the proteins targeted for NatC KO mediated degradation, suppresses defects of NatC deletion. In conclusion, NatC-mediated N-terminal acetylation acts as a protective mechanism against protein degradation, which is relevant for increased longevity and motility. In BriefVarland, Silva et al. define that a major cellular role of N-terminal acetylation is shielding proteins from proteasomal degradation by specific ubiquitin ligases. The human N-terminal acetyltransferase NatC protects the neddylation regulator UBE2M from degradation, while overexpression of Drosophila UBE2M/UbcE2M rescues the longevity and motility defects of NatC deletion. HighlightsO_LIN-terminal acetylation by NatC protects proteins from degradation, including UBE2M C_LIO_LIUBR4-KCMF1 targets unacetylated N-terminal Met followed by a hydrophobic residue C_LIO_LIDrosophila NatC is required for adult longevity and motility in elderly C_LIO_LIOverexpression of UBE2M/UbcE2M suppresses Drosophila NatC deletion phenotypes C_LI

molecular biology↗

bioRxiv2017

A population of adult satellite-like cells in Drosophila is maintained through a switch in RNA-isoforms

Adult stem cells are important for tissue maintenance and repair. One key question is how such cells are specified and then protected from differentiation for a prolonged period. Investigating the maintenance of Drosophila muscle progenitors (MPs) we demonstrate that it involves a switch in zfh1/ZEB1 RNA-isoforms. Differentiation into functional muscles is accompanied by expression of miR-8/miR-200, which targets the major zfh1-long RNA isoform and decreases Zfh1 protein. Through activity of the Notch pathway, a subset of MPs produce an alternate zfh1-short isoform, which lacks the miR-8 seed site. Zfh1 protein is thus maintained in these cells, enabling them to escape differentiation and persist as MPs in the adult. There, like mammalian satellite cells, they contribute to muscle homeostasis. Such preferential regulation of a specific RNA isoform, with differential sensitivity to miRs, is a powerful mechanism for maintaining a population of poised progenitors and may be of widespread significance.

developmental biology↗