Biology subjects

Booth, D.

Publications and source records attributed to Booth, D..

8 recordsLinked to original sources

bioRxiv2025

Potential yield and food provisioning gains from rebuilding the worlds coral reef fish stocks

Many coral reefs have fish stocks that are depleted below the level at which sustainable production is maximized. Lower production means that millions of people are losing out on potential food, income and livelihoods. Rebuilding these stocks to maximize sustainable production can contribute towards ending hunger and malnutrition but requires active and effective fisheries management. Yet, for fish stock recovery plans to be implemented, recovery benefits, targets and timeframes need to be quantified. Here, using 1211 individual reef sites and 23 jurisdictions identified globally as being below maximum sustainable production levels, we show that reefs have the potential to increase sustainable yields by nearly 50% if allowed to recover towards their maximum production levels. For individual jurisdictions this recovery represents from 20,000 up to 162 million additional sustainable servings of reef fish per year in comparison to current sustainable production, meeting recommended seafood intake for up to 1. 4 million additional people a year. However, such growth and food provisioning will require fish stocks to double their standing biomass (increase by a median of 32 t/km2). Recovery timeframes range from 6.4 years under the most stringent scenario (a seascape moratorium) to 49.7 years under the maximum harvest scenario that results in recovery. We find that locations with the greatest potential for sustainable gains in yield are among those with the greatest food and micronutrient deficiencies, underscoring both the challenges and opportunities in recovering fish assemblages to achieve their maximum sustainable potential. Significance StatementCoral reef fisheries are a critical food source for people throughout the tropics. However, most reefs around the globe have fish biomass values below those enabling maximal sustainable production, risking food availability, income, and livelihoods. Rebuilding fish assemblages can increase sustainable food supplies, and, if these are well distributed, directly contribute towards enhanced food security. We show that recovering fish stocks on coral reefs can significantly increase the number of sustainable fish servings produced per year and the number of people meeting fish intake recommendations, particularly for countries with high malnutrition. Our study highlights the sustainable food provisioning potential of recovering reef fisheries and quantifies how much recovery would be needed and the time such recovery would take.

ecology↗

bioRxiv2024

Brain-body circuit by which midbrain dopamine neuronal activity modulates splenic immunity

Midbrain dopamine neurons are well-known to shape central nervous system function, yet there is growing evidence for their influence on the peripheral immune system. Here we demonstrate that midbrain dopamine neurons form a circuit to the spleen via a multi-synaptic pathway from the dorsal vagal complex (DVC) through the celiac ganglion. Midbrain dopamine neurons modulate the activity of D1- and D2-like dopamine receptor-expressing DVC neurons. In vivo activation of midbrain dopamine neurons induced dopamine release in the DVC and increased immediate early gene expression in both the DVC and celiac ganglion. Activation of this midbrain-to-spleen circuit reduced spleen weight and decreased naive CD4+ T-cell populations without affecting total T-cell numbers. These findings unveil a functional midbrain- DVC-celiac ganglion-spleen pathway, through which midbrain dopamine neurons modulate splenic immunity. These novel insights into the neural regulation of the immune system have important implications for diseases involving altered dopamine neurotransmission and highlight potential targets for immunotherapeutic interventions.

neuroscience↗

bioRxiv2024

Is there a negative trend in abundance of the weedyseadragon (Phyllopteryx taeniolatus) discernible in survey data summarised in Edgar et al. (2023)?

Decadal changes in abundance of marine organisms along the Australian coastline were reported in a recent Nature paper by Edgar et al. (2023). We reexamine the data used in that paper, and show that the conclusion of a 59% decline in weedy seadragons (Phyllopteryx taeniolatus) cannot be justified based on these data. The data are too sparse, especially for the final survey years of 2020 and 2021, and it is this sparsity in combination with particular modelling choices made by Edgar et al. (2023) that drives their results. While not specifically considered here, it is likely that these issues also affect the results on numerous other species reported in Edgar et al. (2023).

ecology↗

bioRxiv2024

Individual performance niches may buffer population responses to climate change in estuarine fishes

Climate change may impact individual organisms in different ways, a consideration often overshadowed by predominant focus on population effects in studies. We examined three estuarine fish species to determine if individual fish performance, persisted across winter water temperatures. Fish performance at 16{degrees}C (current Sydney winter estuarine water temperature) and 20{degrees}C (predicted under climate change) with low and high food regimes was assessed using key physiological (growth, aerobic scope, burst speed) and behavioural parameters (foraging activity, boldness, shelter usage, predator escape response). We expected a strong positive relationship between performance at 16{degrees}C and 20{degrees}C for each parameter, and interactions with food level, however in general this was not found for any species. Relative performance was only maintained across temperatures for a few parameters, such as bite rate, boldness, and shelter response in one species (trumpeter Pelates sexlineatus), with aerobic scope in silver biddy Gerres subfasciatus, and boldness in fortescue Centropogon australis. Our results suggest that individuals fitness (directly via changes in growth, indirectly via behaviours) will be impacted by climate warming due to differences in relative performance among individuals across water temperatures. Changes in relative performance among individuals may initially compensate for a population-level response, thereby buffering the effects of climate change.

ecology↗

bioRxiv2022

Sustainable reference points for multispecies coral reef fisheries

Sustainably managing fisheries requires regular and reliable evaluation of stock status. However, most multispecies reef fisheries around the globe tend to be data-poor and lack research and monitoring capacity (e.g., long-term fishery data), preventing the estimation of sustainable reference points against which stocks can be assessed. Here, combining fish biomass data for more than 2000 coral reefs with catch estimates from 99 jurisdictions, we estimate site-specific sustainable reference points for coral reef fisheries and use these to assess the status of coral reef fish stocks. We reveal that more than half of jurisdictions with available information have stocks of conservation concern, having failed at least one fisheries sustainability benchmark. We quantify the trade-offs between biodiversity, mean fish length, and ecosystem functions relative to key benchmarks and highlight the ecological benefits of increasing sustainability. Our approach yields multispecies sustainable reference points for coral reef fisheries using environmental conditions, a promising means for enhancing the sustainability of the worlds coral reef fisheries. TeaserA global assessment of the sustainability of multispecies reef fisheries indicates that more than half of jurisdictions have failed at least one of two key sustainability benchmarks.

ecology↗

bioRxiv2020

LINE-1 DNA methylation in response to aging and vitamin D

Retrotransposons are genetic elements capable of their own propagation and insertion into the human genome. Because of their mutagenic potential, retrotransposons are heavily suppressed by mechanisms including DNA methylation. Increased age is associated with decreasing DNA methylation of the LINE-1 retrotransposon and may partially explain the predisposition towards malignancy with advancing age. Vitamin D has been investigated for its effects on DNA methylation at LINE-1 elements with mixed results. This study hypothesised that LINE-1 DNA methylation is altered by vitamin D exposure and age. Using whole genome bisulfite sequencing of adult and newborn haematopoietic progenitors, DNA methylation at LINE-1 elements was not found to vary between cells cultured with or without calcitriol, both in adults and newborns. In contrast, several LINE-1 regions were found to be differentially methylated between adults and children, but these were not uniformly hypermethylated in paediatric cells. The results of this study suggest that at least in haematopoietic cells, vitamin D does not appear to affect LINE-1 methylation.

genetics↗

bioRxiv2018

Glycosyltransferase homologs prevent promiscuous cell aggregation and promote multicellular development in the choanoflagellate S. rosetta

The mechanisms underlying multicellular development in the animal stem lineage may be reconstructed through the study of choanoflagellates, the closest living relatives of animals. To determine the genetic underpinnings of multicellularity in the emerging model choanoflagellate S. rosetta, we performed a screen for mutants with defects in multicellular rosette development. In two of the mutants, Jumble and Couscous, single cells failed to develop into orderly rosettes but instead aggregated promiscuously into amorphous clumps of cells. Both mutants mapped to lesions in genes encoding glycosyltransferases and the mutations perturbed glycosylation patterns in the extracellular matrix (ECM). In animals, glycosyltransferases transfer activated sugars to donor molecules and thereby sculpt the polysaccharide-rich ECM, regulate integrin and cadherin activity, and, when disrupted, contribute to tumorigenesis. The finding that glycosyltransferases promote proper rosette development and prevent cell aggregation in S. rosetta suggests a pre-metazoan role for glycosyltransferases in regulating development and preventing abnormal tumor-like multicellularity.\n\nIMPACT STATEMENTA genetic screen reveals that glycosyltransferases are required for proper rosette development and the prevention of cell clumping in one of the closest living relatives of animals, the choanoflagellate S. rosetta.

genetics↗

bioRxiv2018

A robust method for transfection in choanoflagellates illuminates their cell biology and the ancestry of animal septins

As the closest living relatives of animals, choanoflagellates offer unique insights into animal origins and core mechanisms underlying animal cell biology. However, unlike traditional model organisms, such as yeast, flies and worms, choanoflagellates have been refractory to DNA delivery methods for expressing foreign genes. Here we report the establishment of a robust method for expressing transgenes in the choanoflagellate Salpingoeca rosetta, overcoming barriers that have previously hampered DNA delivery and expression. To demonstrate how this method accelerates the study of S. rosetta cell biology, we engineered a panel of fluorescent protein markers that illuminate key features of choanoflagellate cells. We then investigated the localization of choanoflagellate septins, a family of GTP-binding cytoskeletal proteins that are hypothesized to regulate the multicellular rosette development in S. rosetta. Fluorescently tagged septins localized to the basal pole of S. rosetta single cells and rosettes in a pattern resembling septin localization in animal epithelia. The establishment of transfection in S. rosetta and its application to the study of septins represent critical advances in the growth of S. rosetta as an experimental model for investigating choanoflagellate cell biology, core mechanisms underlying animal cell biology, and the origin of animals.

cell biology↗