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Bojanek, K.

Publications and source records attributed to Bojanek, K..

4 recordsLinked to original sources

Discovering flexible codes for prediction across timescales in the retina

The retina must encode visual information in a way that supports fast, predictive behavior despite significant processing delays. How this encoding adapts in an ever-changing world, when the temporal statistics of visual input shift, remains an open question. Here we record from populations of retinal ganglion cells in the axolotl as they respond to a stochastic moving bar stimulus across five different temporal correlation scales. Using the information bottleneck (IB) framework, and treating the prediction horizon as a free parameter inferred from the data, we ask what timescale of future motion the retina is optimized to predict under each stimulus condition. We find that the retina adapts its predictive encoding to the changing stimulus statistics: as the time constant of the stimulus dynamics increases, the inferred prediction horizon lengthens. The population shifts toward encoding more velocity information, and motion anticipation grows, all the while maintaining near-optimal prediction efficiency. Population surprise, quantified through a Boltzmann machine model of the retinal response distribution, tracks stimulus surprise under the inferred optimal compression. This connects the retinas reversal response to efficient predictive encoding. These results show that retinal population codes flexibly adjust their predictive timescale to the temporal structure of their inputs. More broadly, they demonstrate that the IB framework can be used to discover, not just test for, computational objectives in sensory populations.

neuroscience↗

Preserving predictive information under biologically plausible compression

Retinal ganglion cells (RGCs) show high convergence onto their downstream projections, which poses a problem for information transfer: how can information be preserved through a synaptic layer that has significantly more inputs than outputs? Lossy compression suggests many efficient, yet computation-agnostic, methods for reading out input stimuli or activity patterns. Focusing on prediction as a ubiquitous computation in the brain, we compare compressions that explicitly retain predictive information to common neural compression frameworks that do not. We find evidence that downstream areas may compress their retinal inputs in a way that allows them to perform optimal predictive computations across many natural scenes. Other sensory systems also exhibit compression in their processing hierarchies, such as at the glomeruli stage in the olfactory system, and we hope that our framework will be useful in cases where it is not yet known how information about a specific computation is maintained under compression. SIGNIFICANCE STATEMENTProducing successful behavior, such as escaping predators, requires the visual system to overcome significant sensory processing delays by predicting the future state of the world. Neurons in the eye capture some of the most predictive features of visual information, but this information must be accessible to downstream areas that receive synaptically compressed inputs from the retina. We tested how carefully retinal activity must be compressed to preserve predictive information in natural scenes. Biologically plausible compressions that are agnostic to prediction can preserve substantial future information, but only compression optimized for this task extracts generalizable motifs that allow it to predict in any natural scene. This suggests that downstream circuits may optimally compress their inputs specifically for the task of prediction.

neuroscience↗

Stimulus invariant aspects of the retinal code drive discriminability of natural scenes

Everything that the brain sees must first be encoded by the retina, which maintains a reliable representation of the visual world in many different, complex natural scenes while also adapting to stimulus changes. This study quantifies whether and how the brain selectively encodes stimulus features about scene identity in complex naturalistic environments. While a wealth of previous work has dug into the static and dynamic features of the population code in retinal ganglion cells, less is known about how populations form both flexible and reliable encoding in natural moving scenes. We record from the larval salamander retina responding to five different natural movies, over many repeats, and use these data to characterize the population code in terms of single-cell fluctuations in rate and pairwise couplings between cells. Decomposing the population code into independent and cell-cell interactions reveals how broad scene structure is encoded in the retinal output. while the single-cell activity adapts to different stimuli, the population structure captured in the sparse, strong couplings is consistent across natural movies as well as synthetic stimuli. We show that these interactions contribute to encoding scene identity. We also demonstrate that this structure likely arises in part from shared bipolar cell input as well as from gap junctions between retinal ganglion cells and amacrine cells.

neuroscience↗

Cyclic transitions between higher order motifs underlie sustained activity in asynchronous sparse recurrent networks

Many studies have demonstrated the prominence of higher-order patterns in excitatory synaptic connectivity as well as activity in neocortex. Surveyed as a whole, these results suggest that there may be an essential role for higher-order patterns in neocortical function. In order to stably propagate signal within and between regions of neocortex, the most basic - yet nontrivial - function which neocortical circuitry must satisfy is the ability to maintain stable spiking activity over time. Here we algorithmically construct spiking neural network models comprised of 5000 neurons using topological statistics from neocortex and a set of objective functions that identify networks which produce naturalistic low-rate, asynchronous, and critical activity. We find that the same network topology can exhibit either sustained activity under one set of initial membrane voltages or truncated activity under a different set. Yet these two outcomes are not readily differentiated by rate or criticality. By summarizing the statistical dependencies in the pairwise activity of neurons as directed weighted functional networks, we examined the transient manifestations of higher-order motifs in the functional networks across time. We find that stereotyped low variance cyclic transitions between three isomorphic triangle motifs, quantified as a Markov process, are required for sustained activity. If the network fails to engage the dynamical regime characterized by a recurring stable pattern of motif dominance, spiking activity ceased. Motif cycling generalized across manipulations of synaptic weights and across topologies, demonstrating the robustness of this dynamical regime for sustained spiking in critical asynchronous network activity. Our results point to the necessity of higher-order patterns amongst excitatory connections for sustaining activity in sparse recurrent networks. They also provide a possible explanation as to why such excitatory synaptic connectivity and activity patterns have been prominently reported in neocortex.\n\nAuthor summaryHere we address two questions. First, it remains unclear how activity propagates stably through a network since neurons are leaky and connectivity is sparse and weak. Second, higher order patterns abound in neocortex, hinting at potential functional relevance for their presence. Several lines of evidence suggest that higher-order network interactions may be instrumental for spike propagation. For example, excitatory synaptic connectivity shows a prevalence of local neuronal cliques and patterns, and propagating activity in vivo displays elevated clustering dominated by specific triplet motifs. In this study we demonstrate a mechanistic link between activity propagation and higher-order motifs at the level of individual neurons and across networks. We algorithmically build spiking neural network (SNN) models to mirror the topological and dynamical statistics of neocortex. Using a combination of graph theory, information theory, and probabilistic tools, we show that higher order coordination of synapses is necessary for sustaining activity. Coordination takes the form of cyclic transitions between specific triangle motifs. The results of our model are consistent with numerous experimental observations in neuroscience, and their generalizability to other weakly and sparsely connected networks is predicted.

neuroscience↗