Biology subjects

Boettiger, C.

Publications and source records attributed to Boettiger, C..

4 recordsLinked to original sources

bioRxiv2025

Global monitoring of wildlife mortality through participatory science in near-real time

Detection of wildlife mortality events is critical for timely conservation and natural resource management. We present an open-source, web-based decision support tool that queries, aggregates and summarizes participatory science data from iNaturalist to monitor mortality events worldwide. We demonstrate the effectiveness of this approach using four case studies spanning taxonomic, spatial, and temporal scales. In Canada and the United States, high peaks of bird mortality coincided with zoonotic risk during avian influenza outbreaks. Across Latin America, we detected 75 mortality events of critically endangered species. In California, recorded mammal mortality was associated with human infrastructure, including proximity to roads, and to a lesser extent, the human footprint. Mortality of pumas (Puma concolor) was detected across nine countries, highlighting the need for international cooperation to conserve mobile species. Our tool enables resource managers to flag emerging threats and empowers participatory scientists to monitor and integrate mortality records for conservation.

ecology↗

bioRxiv2023

The AusTraits Plant Dictionary

Traits with intuitive names, a clear scope and explicit description are essential for all trait databases. Reanalysis of data from a single database, or analyses that integrate data across multiple databases, can only occur if researchers are confident the trait concepts are consistent within and across sources. The lack of a unified, comprehensive resource for plant trait definitions has previously limited the utility of trait databases. Here we describe the AusTraits Plant Dictionary (APD), which extends the trait definitions included in the new trait database AusTraits. The development process of the APD included three steps: review and formalisation of the scope of each trait and the accompanying trait description; addition of trait meta-data; and publication in both human and machine-readable forms. Trait definitions include keywords, references and links to related trait concepts in other databases, and the traits are grouped into a hierarchy for easy searching. As well as improving the usability of AusTraits, the Dictionary will foster the integration of trait data across global and regional plant trait databases.

ecology↗

bioRxiv2022

Impact of adolescent intermittent ethanol exposure on interneurons and their surrounding perineuronal nets in adulthood.

BackgroundBinge alcohol exposure during adolescence results in long-lasting alterations in brain and behavior. For example, adolescent intermittent ethanol (AIE) exposure in rodents results in long-term loss of functional connectivity among prefrontal cortex (PFC) and striatal regions as well as a variety of neurochemical, molecular, and epigenetic alterations. Interneurons in the PFC and striatum play critical roles in behavioral flexibility and functional connectivity. For example, parvalbumin (PV) interneurons are known to contribute to neural synchrony, and cholinergic interneurons contribute to strategy selection. Furthermore, extracellular perineuronal nets (PNNs) surround some interneurons, particularly PV+ interneurons, to further regulate cellular plasticity. The effect of AIE exposure on expression of these markers within the PFC is not well understood. MethodsThe present study tested the hypothesis that AIE exposure reduces expression of PV+ and ChAT+ interneurons in the adult PFC and striatum and increases related expression of PNNs (marked by binding of Wisteria Floribunda agglutinin lectin; WFA) in adulthood. Male rats were exposed to AIE (5 g/kg/day, 2-days-on/2-days-off, i.g., P25-P54) or water (CON), and brain tissue was harvested in adulthood (> P80). Immunohistochemistry and co-immunofluorescence were used to assess expression of ChAT, PV, and WFA labeling within the adult PFC and striatum following AIE exposure. ResultsChAT and PV interneuron numbers in the striatum and PFC were unchanged after AIE exposure. However, WFA labeling in the PFC of AIE-exposed rats was increased compared to CON rats. Moreover, significantly more PV neurons were surrounded by WFA labeling in AIE-exposed subjects relative to controls in both PFC subregions assessed: the orbitofrontal cortex (CON = 34%; AIE = 40%) and the medial PFC (CON = 10%; AIE = 14%). ConclusionsThese findings indicate that while PV interneuron expression in the adult PFC and striatum is unaltered following AIE exposure, PNNs surrounding these neurons (indicated by extracellular WFA binding) are increased. This increase in PNNs may restrict plasticity of the ensheathed neurons, thus contributing to impaired microcircuitry in frontostriatal connectivity and related behavioral impairments.

neuroscience↗

bioRxiv2019

Grazer behavior can regulate large-scale patterns of community states

Ecosystem patterning can arise from environmental heterogeneity, biological feedbacks that produce multiple persistent ecological states, or their interaction. One source of feed-backs is density-dependent changes in behavior that regulates species interactions. By fitting state-space models to large-scale ([~]500km) surveys on temperate rocky reefs, we find that behavioral feedbacks best explain why kelp and urchin barrens form either reef-wide patches or local mosaics. Best-supported models in California include feedbacks where starvation intensifies grazing across entire reefs create reef-scale, alternatively stable kelp- and urchin-dominated states (32% of reefs). Best-fitting models in New Zealand include the feedback of urchins avoiding dense kelp stands that can increase abrasion and predation risk, which drives a transition from shallower urchin-dominated to deeper kelp-dominated zones, with patchiness at 3-8m depths with intermediate wave stress. Connecting locally-studied processes with region-wide data, we highlight how behavior can explain community patterning and why some systems exhibit community-wide alternative stable states.

ecology↗