Biology subjects

Bloecher, J.

Publications and source records attributed to Bloecher, J..

4 recordsLinked to original sources

bioRxiv2026

Promises and limitations of current ancient human epigenetic clocks

Age-at-death estimation of archaeological human remains is central to palaeodemographic research yet remains particularly challenging for adults where osteological methods often produce imprecise age ranges. Epigenetic clocks can accurately predict chronological age in modern humans, but their applicability to ancient human DNA is unclear due to data limitation and indirect methylation inference. Here, we evaluate the performance of existing epigenetic clocks on reconstructed ancient human methylomes combining high-coverage genomic data and a correction framework adapted to mitigate damage-derived sequence bias. Across multiple CpG window sizes, neither direct clock application nor regression-based retraining produced reliable continuous age-at-death estimates. Reframing age inference as adult-subadult classification did not return statistically supported age classes either. In contrast, sex estimation based on X-chromosome methylation achieved perfect accuracy, before and after correction. Together, these results indicate that current palaeo-epigenetic approaches reliably recover global biological signals but are not sufficiently sensitive to capture gradual, age-related variation in humans. Estimating age-at-death from ancient methylomes will therefore require methodological advances beyond correction alone, including reference data and improved models for inferring damage-derived epigenetic signals.

genomics↗

bioRxiv2022

Was fishing village of Lepenski Vir built by Europe's first farmers?

Today, it is widely accepted that agriculture and settled village life arrived in Europe as a cultural package, carried by people migrating from Anatolia and the Aegean Basin. The putative fisher-forager site of Lepenski Vir in Serbia has long been acknowledged as an exception to this model. Here, the Mesolithic-Neolithic transition - possibly inspired by interaction with the new arrivals - was thought to have taken place autochthonously on site. Our reinterpretation, based on ancient genomes, as well as archaeological and isotopic evidence, revisits this conclusion, indicating that here too, house construction, early village society and agriculture were primarily associated with Europes first farmers, thus challenging the long-held interpretation of Lepenski Vir as a Mesolithic community that adopted Neolithic practices. A detailed timeline of population changes at the site suggests that Aegean incomers did not simply integrate into an established Mesolithic society, rather founded new lineages and households. Iron Gates foragers and their admixed descendants appear to have been buried largely separately, on the fringes of the settlement, their diet showing no major shift from aquatic to terrestrial food resources.

genomics↗

bioRxiv2022

Between fishing and farming: palaeogenomic analyses reveal cross-cultural interactions triggered by the arrival of the Neolithic in the Danube Gorges

While early Neolithic populations in Europe were largely descended from early Aegean farmers, there is also evidence of episodic gene flow from local Mesolithic hunter-gatherers into early Neolithic communities. Exactly how and where this occurred is still unknown. Here we report direct evidence for admixture between the two groups at the Danube Gorges in Serbia. Analysis of palaeogenomes recovered from skeletons revealed that second-generation mixed individuals were buried amidst individuals whose ancestry was either exclusively Aegean Neolithic or exclusively local Mesolithic. The mixed ancestry is also reflected in a corresponding mosaic of grave goods. With its deep sequence of occupation and its unique dwellings that suggest at least semi-sedentary occupation since the late Mesolithic, the area of the Danube Gorges has been at the center of the debate about the contribution of Mesolithic societies to the Neolithisation of Europe. As suggested by our data, which were processed exclusively with uncertainty-aware bioinformatic tools, it may have been precisely in such contexts that close interactions between these societies were established, and Mesolithic ancestry and cultural elements were assimilated.

genomics↗

bioRxiv2020

Kinship, acquired and inherited status, and population structure at the Early Bronze Age Mokrin necropolis in northern Serbia.

Twenty-four ancient genomes with an average sequencing coverage of 0.85{+/-}0.25 X were produced from the Mokrin necropolis, an Early Bronze Age (2,100-1,800 BC) Maros culture site in Serbia, to provide unambiguous identification of biological sex, population structure, and genetic kinship between individuals. Of the 24 investigated individuals, 15 were involved in kinship relationships of varying degrees, including 3 parent-offspring relationships. All observed parent-offspring pairs were mother and son. In addition to the absence of biological daughters, we observed a number of young women and girls with no biological relatives in our sample. These observations, together with the high mitochondrial diversity in our sample, are consistent with the practice of female exogamy in the population served by Mokrin. However, moderate-to-high Y-chromosomal diversity suggests a degree of male mobility greater than that expected under strict patrilocality. Individual status differences at Mokrin, as indicated by grave goods, support the inference that females could inherit status, but could not transmit status to all their sons. The case of a son whose grave good richness outstrips that of his biological mother suggests that sons had the possibility to acquire status during their lifetimes. The Mokrin sample resembles a genetically unstructured population, suggesting that the communitys social hierarchies were not accompanied by strict marriage barriers.

genomics↗