Blanford, J. | bioRxiv Science

bioRxiv2025

Trehalose 6-phosphate activates Target of Rapamycin in plants

Coordinating carbon availability with growth is a fundamental challenge in plants. Target of Rapamycin (TOR) promotes cell growth and is activated by sugars, but the underlying molecular mechanism has remained elusive. Here, we identify trehalose 6-phosphate (T6P), a sucrose-derived metabolite, as the key signal linking carbon to TOR activity. In Arabidopsis and Brassica napus, T6P stimulates cell growth via TOR and is required for sucrose-induced TOR activation. We show immunoprecipitates using anti-TOR antibodies contain catalytically active TOR in addition to the catalytically active SnRK1 energy sensor kinase. In vitro experiments show that, SnRK11, the catalytic subunit of SnRK1 suppresses TOR activity, and T6P reverses this inhibition in a dose-dependent manner, providing biochemical evidence that T6P activates TOR by suppressing SnRK1. This work thus establishes a direct sucrose-T6P-SnRK1-TOR signaling axis that couples carbon availability to plant growth.

plant biology↗

bioRxiv2024

Enhancing lipid production in plant cells through high-throughput genome editing and phenotyping via a scalable automated pipeline

Plant bioengineering is a time-consuming and labor-intensive process, with no guarantee of achieving the desired trait. Here we report a fast, automated, scalable, high-throughput pipeline for plant bioengineering (FAST-PB). FAST-PB achieves gene cloning, genome editing, and product characterization by integrating automated biofoundry engineering of callus and protoplast cells with single cell matrix-assisted laser desorption/ionization mass spectrometry (MALDI-MS). We first demonstrate that FAST-PB can streamline the Golden Gate cloning process, with the capacity to construct 96 vectors in parallel. To prove the concept, using FAST-PB, we first found that PEG2050 significantly increases transfection efficiency by over 45%. To validate the pipeline, we established a reporter-gene-free method for CRISPR editing via mutation of HCF136, affecting cellular chlorophyll fluorescence. Next, we applied this pipeline for lipid production and found that diverse lipids were significantly enhanced up to sixfold through introducing multi-gene cassettes via CRISPR activation, and regenerated plant using this platform. Lastly, we harnessed FAST-PB to achieve high-throughput single-cell lipid profiling through the integration of MALDI-MS with the biofoundry, and differentiated engineered and unengineered cells using the single-cell lipidomics. These innovations massively increase the throughput of synthetic biology, genome editing, and metabolic engineering, and change what is possibly using single-cell metabolomics in plants.

synthetic biology↗