Biology subjects

Bitton, P.-P.

Publications and source records attributed to Bitton, P.-P..

6 recordsLinked to original sources

bioRxiv2026

The BEAC, an epigenetic clock for birds

Epigenetic clocks are powerful tools for estimating both chronological and biological age, enabling the integration of age information into population monitoring, demographic modelling, and research on the ecophysiology and evolution of ageing. Most epigenetic clocks so far have been developed for mammals: here, we present the Bird Epigenetic Ageing Clock (BEAC) for estimating chronological age in avian species. BEAC was established based on genome-wide enzymatic methylation sequencing data of known-age king penguins (Aptenodytes patagonicus), and validated in nine other bird species. The BEAC collects age-informative signals into a bisulfite amplicon sequencing panel of 24 primer pairs, providing a highly accurate and cost-effective alternative to sequencing-intensive approaches. It achieved strong predictive performance in independent king penguin training (R{superscript 2}=0.88; MAE=1.7 years, n=78) and testing data (R{superscript 2}=0.79; MAE=2.3 years, n=41), with negligible batch effects, high longitudinal consistency, and resilience to reduced sample size or missing loci. Importantly, cross-species validation across 180 samples showed that BEAC reliably captures age-associated methylation signals in nine additional bird species across seven clades, demonstrating that a single set of loci can be predictive of ageing across multiple different bird species. BEAC offers a flexible, empirically validated tool and a transferable framework for developing epigenetic clocks in avian species, providing a highly valuable resource for eco-evolutionary studies of ageing in wild species.

molecular biology↗

bioRxiv2023

Bill color is dynamic across the breeding season but not condition-dependent in Atlantic puffins

Sexually monomorphic species have been historically overlooked in the sexual/social selection literature, but there is growing evidence that mutual ornamentation can be driven by selective forces such as mutual sexual selection or selection for individual recognition. Examining the properties of a trait may elucidate which forces most likely play a role, especially when comparing the characteristics of quality and identity traits. Atlantic puffins (Fratercula arctica) are an example of a mutually ornamented monomorphic species, where both males and females display a bright orange-red bill and orange gape rosette during the breeding season and are ornamented to similar degrees. In this study, we investigate whether the properties of the colorful bill and rosette, specifically lability across the breeding season and condition-dependence, more closely align with signals of quality or identity. Our findings support prior work that the bill is sexually monochromatic from an avian visual perspective. We also determined that the bill changes in a discriminable way within individuals and is especially dynamic in the fleshy cere and rosette. However, no metric of color on any region of the bill or rosette were significantly related to current body condition. Ultimately, we argue that bill color likely functions as a quality signal, although further study is needed to determine which aspect of quality coloration signals, if not condition. These results provide a basis for experimentally testing the signal value of the colorful bill in Atlantic puffins, and more broadly, a framework for investigating the properties of mutual ornamentation in avian species. Lay summaryThe properties of a colorful trait inform its potential function as a signal. We investigated whether the Atlantic puffins colorful bill could reflect an individuals identity or quality. Because bill color changes within the breeding season, this feature is not stable enough to reliably signal identity. Bill color is also not related to a common proxy of quality (body condition) but may communicate another aspect of quality such as foraging or parenting ability.

animal behavior and cognition↗

bioRxiv2018

Baseline corticosterone does not reflect iridescent plumage traits in female tree swallows

The production of high quality secondary sexual traits can be constrained by trade-offs in the allocation of energy and nutrients with other metabolic activities, and is mediated by physiological processes. In birds, the factors influencing male plumage quality have been well studied; however, factors affecting female plumage quality are poorly understood. Furthermore, it remains uncertain which physiological traits mediate the relationship between body condition and ornaments. In this three-year study of after-second-year female tree swallows (Tachycineta bicolor), we investigated (1) the relationship between baseline corticosterone near the end of the brood-rearing period (CORTBR) and feather colour characteristics (hue, saturation, brightness) the following year, and (2) the relationship between baseline corticosterone measured during incubation (CORTI) and brood rearing (CORTBR), and feather colour in the same year. To control for reproductive effort, we included reproductive parameters as covariates in all analyses. In this first study between CORT and the plumage colour characteristics of a species bearing iridescent feathers, we did not find any relationship between CORTBR and the colour of subsequently-produced feathers, nor did we find any relationship between CORTI and the colour of feathers displayed during that breeding season. If CORT levels at the end of breeding carry over to influence the immediately subsequent moult period as we expect, our results generally indicate that structural plumage quality may not be as sensitive to circulating CORT levels compared to carotenoid-based colouration. Future studies, particularly those employing experimental manipulations of CORT during moult in species with iridescent traits, are necessary to fully determine the role glucocorticoids play in mediating the quality of secondary sexual characteristics.

zoology↗

bioRxiv2018

Visual modelling validates prey detection by means of diurnal active photolocation in a small cryptobenthic fish

Active sensing has been well documented in animals that use echolocation and electrolocation. Active photolocation, or active sensing using light, has received much less attention, and only in bioluminescent nocturnal species. Recently, however, evidence has suggested the diurnal triplefin Tripterygion delaisi uses controlled iris radiance, termed ocular sparks, for prey-detection. While this form of diurnal active photolocation was behaviourally described, a study exploring the complete physical and theoretical process would provide a more compelling case supporting this mechanism. In this paper, we investigate the conditions under which diurnal active photolocation could assist T. delaisi in detecting potential prey items. In the field, we sampled prey gammarids (Genus Cheirocratus) from foraging substrates, and characterized the spectral properties of their body and eyes, which possess strong reflectors between the ommatidia. In the laboratory, we quantified ocular spark sizes and the angular dependence of their radiance. Together with environmental light measurements and the visual properties of T. delaisi, we modeled diurnal active photolocation under various scenarios. Our results corroborate that diurnal active photolocation can help T. delaisi detect gammarids at distances relevant to foraging, 4.5 cm under favourable conditions and up to 2.5 cm under average conditions. Because ocular sparks are widespread across many different fish species, diurnal active photolocation for micro-prey may be a common predation strategy.

zoology↗

bioRxiv2018

Diurnal active photolocation enhances predator detection in a marine fish

Active sensing by means of light is rare. In vertebrates, it is known only from chemiluminescent fish with light organs below their pupils, an anatomical arrangement that is ideal to generate eyeshine in the pupils of nearby organisms. Here, we test whether diurnal fish can achieve the same by redirecting sunlight through reflection instead. We recently showed that small (< 5 cm), benthic, marine triplefin fish actively redirect downwelling light using their iris. We hypothesized that this mechanism allows triplefins to improve detection of a cryptic organism by generating eyeshine in its pupil. Here, we tested this by attaching small dark hats to triplefins to shade their iris from downwelling light. Two controls consisted of triplefins with a clear or no hat. These treatments test the prediction that light redirection increases the visual detection ability of triplefins. To this end, we placed treated fish in a tank with a display compartment containing either a stone as the control stimulus, or a scorpionfish, i.e. a cryptic, motionless triplefin predator with retroreflective eyes. After overnight acclimatization, we determined the average distance triplefins kept from the display compartment over two days. Both in the laboratory (n = 15 replicates per treatment) and in a similar field experiment at 15 m depth (n = 43 replicates per treatment) fish kept longer distances from the scorpionfish than from the stone. This response varied between hat treatments: shaded triplefins stayed significantly closer to the scorpionfish in the laboratory and in one of two orientations tested in the field. A follow-up field experiment at 10 m depth revealed the immediate response of triplefins to a scorpionfish. At first, many individuals (n = 80) moved towards it, with shaded triplefins getting significantly closer. All individuals then gradually moved to a safer distance at the opposite half of the tank. Visual modelling supported the experimental results by showing that triplefins can redirect enough light with their iris to increase a scorpionfishs pupil brightness above detection threshold at a distance of 7 cm under average field conditions and at more than 12 cm under favorable conditions. We conclude that triplefins are generally good in the visual detection of a cryptic predator, but can significantly improve this ability when able to redirect downwelling light with their iris and induce eyeshine in the predators pupil. We discuss the consequences of \"diurnal active photolocation\" for visual detection and camouflage among fish species.

zoology↗

bioRxiv2017

Daytime eyeshine contributes to pupil camouflage in a cryptobenthic marine fish

Ocular reflectors enhance eye sensitivity in dim light, but can produce reflected eyeshine when illuminated. Most teleost fish occlude their reflectors during the day. The opposite is observed in cryptic sit-and-wait predators such as scorpionfish and toadfish, where reflectors are occluded at night and exposed during the day. This results in daytime eyeshine, proposed to enhance pupil camouflage by reducing the contrast between the otherwise black pupil and the surrounding tissue. In this study, we test this hypothesis in the scorpionfish Scorpaena porcus and show that eyeshine is the result of two mechanisms: the previously described Stratum Argenteum Reflected (SAR) eyeshine, and Pigment Epithelium Transmitted (PET) eyeshine, a newly described mechanism for this species. We confirm that the ocular reflector is exposed only when the eye is light-adapted, and present field measurements to show that eyeshine reduces pupil contrast against the iris. We then estimate the relative contribution of SAR and PET eyeshine to pupil brightness. Visual models for different light scenarios in the field show that daytime eyeshine enhances pupil camouflage from the perspective of a prey fish. We propose that the reversed occlusion mechanism of some cryptobenthic predators has evolved as a compromise between camouflage and vision.

evolutionary biology↗