Biology subjects

Bisova, K.

Publications and source records attributed to Bisova, K..

3 recordsLinked to original sources

bioRxiv2025

Random UV Mutagenesis for the production of Chlorella vulgaris mutants with low chlorophyll content for the food industry

Microalgae is currently gaining attention as an alternative source for food production. The market is currently demanding colorless algae with high protein and lutein content as an alternative to currently available commodities. This research was aimed at performing random UV mutagenesis on Chlorella vulgaris to obtain mutants with enhanced growth rates and increased growth characteristics. A total of seven mutants were selected to be analyzed after the random mutagenesis. Small (40 mL) and larger-scale (1,000 mL) reactors were used to analyze the production of C. vulgaris mutant biomass, focusing on the dry matter, starch, chlorophyll, protein, fatty acids, and lutein contents. Results implied that mutants showed a higher specific growth rate (2.1-2.5-fold higher) as compared to the wild type. The three mutants (MT 1, 2, and 3) that exhibited a yellow color were subsequently chosen for further scalability. In larger-scale reactors, all mutants exhibited higher protein contents while displaying lower carbohydrate and chlorophyll contents in comparison to the wild type. Moreover, MT 1 exhibited the highest concentration of lutein (0.37%-0.38%) and the lowest concentration of chlorophyll (0.1-0.14%), both of which are of significance for potential applications in the food industry.

cell biology↗

bioRxiv2024

The expansion and diversification of epigenetic regulatory networks underpins major transitions in the evolution of land plants

Epigenetic silencing is essential for regulating gene expression and cellular diversity in eukaryotes. While DNA and H3K9 methylation silence transposable elements (TEs), H3K27me3 marks deposited by the Polycomb repressive complex 2 (PRC2) silence varying proportions of TEs and genes across different lineages. Despite the major development role epigenetic silencing plays in multicellular eukaryotes, little is known about how epigenetic regulatory networks were shaped over evolutionary time. Here, we analyse epigenomes from diverse species across the green lineage to infer the chronological epigenetic recruitment of genes during land plant evolution. We first reveal the nature of plant heterochromatin in the unicellular chlorophyte microalga Chlorella sorokiniana and identify several genes marked with H3K27me3, highlighting the deep origin of PRC2-regulated genes in the green lineage. By incorporating genomic phylostratigraphy, we show how genes of differing evolutionary age occupy distinct epigenetic states in plants. While young genes tend to be silenced by H3K9 methylation, genes that emerged in land plants are preferentially marked with H3K27me3, some of which form part of a common network of PRC2-repressed genes across distantly-related species. Finally, we analyse the potential recruitment of PRC2 to plant H3K27me3 domains and identify conserved DNA-binding sites of ancient transcription factor (TF) families known to interact with PRC2. Our findings shed light on the conservation and potential origin of epigenetic regulatory networks in the green lineage, while also providing insight into the evolutionary dynamics and molecular triggers that underlie the adaptation and elaboration of epigenetic regulation, laying the groundwork for its future consideration in other eukaryotic lineages.

evolutionary biology↗

bioRxiv2021

The biosynthesis of phospholipids is linked to the cell cycle in a model eukaryote

The structural challenges faced by eukaryotic cells through the cell cycle are key for understanding cell viability and proliferation. In this study, we tested the hypothesis that the biosynthesis of structural lipids is linked to the cell cycle. If true, this would suggest that the cells structure would form part the control of the cell cycle. Lipidomics (31P NMR and MS), proteomics (Western immunoblotting) and transcriptomics (RT-qPCR) techniques were used to profile the lipid fraction and characterise aspects of its metabolism at seven stages of the cell cycle of the model eukaryote, Desmodesmus quadricauda. We found considerable, transient increases in the abundance of phosphatidylethanolamine during the G1 phase (+35%, ethanolamine phosphate cytidylyltransferase increased 2{middle dot}5x) and phosphatidylglycerol over the G1/pre-replication phase boundary (+100%, phosphatidylglycerol synthase increased 22x). The relative abundance of phosphatidylcholine fell by ~35% during the G1. N-Methyl transferases for the conversion of phosphatidylethanolamine into phosphatidylcholine were not found in the de novo transcriptome profile, though a choline phosphate transferase was found, suggesting that the Kennedy pathway is the principal route for the synthesis of PC. The fatty acid profiles of the four most abundant lipids suggested that these lipids were not generally converted between one another. The relative abundance of both phosphatidylinositol and its synthase remained constant despite an eightfold increase in cell volume. We conclude that the biosynthesis of the three most abundant structural phospholipids is linked to the cell cycle in D. quadricauda.

systems biology↗