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Birk, J.

Publications and source records attributed to Birk, J..

2 recordsLinked to original sources

Hexose-6-phosphate dehydrogenase deficiency disrupts hepatic fatty acid homeostasis and induces triglyceride accumulation

Hexose-6-phosphate dehydrogenase (H6PD) catalyzes the first two steps of an endoplasmic reticulum-specific pentose phosphate pathway, regenerating luminal NADPH levels in the process. Its function remains insufficiently well understood. Since expression of H6PD is notably high in the liver, we aimed to assess its role in hepatic metabolism. Considering the central role of the liver in lipid synthesis, breakdown and storage, we focused our efforts specifically on studying the effect of H6PD on hepatic lipid metabolism. An H6PD knockout mice strain was generated and characterized by liquid chromatography-high-resolution mass spectrometry (LC-HRMS)-based lipidomic and proteomic analyses of liver tissue. Lipidomics analysis revealed an overall increase in hepatic triglycerides and a specific increase in unsaturated long-chain triglycerides in H6PD knockout mice. Intracellular lipid accumulation was confirmed through Nile Red staining of liver sections. Functional enrichment analysis of proteomics data from the H6PD deficient mice identified a corresponding upregulation of multiple fatty acid metabolism-associated pathways. Additionally, an H6PD knockout AML12 cell line was generated through CRISPR/Cas9 and characterized by lipid staining and functional assays to assess metabolic outcomes. Loss of H6PD led to intracellular lipid accumulation, reduced mitochondrial {beta}-oxidation and increased sensitivity to lipotoxicity, even though fatty acids remained the cells' primary mitochondrial fuel. Ultimately, our results indicate that H6PD plays an as-of-yet undescribed role in hepatic lipid metabolism, implying a link between the availability of NADPH within the endoplasmic reticulum and fatty acid homeostasis.

systems biology↗

Stable isotopes of soil provide insights into hominin paleoenvironments in the Khovaling Loess Plateau of Southern Tajikistan, Central Asia

This study presents a multi-proxy investigation of loess-paleosol sequences from the Khovaling Loess Plateau (KLP) in southern Tajikistan to explore long-term human-environment interactions during the Early Paleolithic. This region has been the focus of numerous archaeological projects since Soviet times, as it contains evidence of some of the oldest ([~]0.9 Ma) hominin occupations in Central Asia and is one of the key regions connecting eastern Asia to centers of hominin evolution that lie to the west. Previous archaeological expeditions have discovered rich collections of stone tools from alternating non-pedogenically modified loess and paleosol sequences at the archaeological sites of Karatau, Lakhuti, Obi-Mazar, and Kuldura. We analyzed lipid biomarkers such as n-alkanes, polycyclic aromatic hydrocarbons (PAHs), together with newly generated stable isotopes ({delta}{superscript 1}3C, {delta}{superscript 1}N), magnetic susceptibility, and archaeological assemblages from three sites: Obi-Mazar/Lakhuti (on-site), and non-artifact-bearing strata from Kuldara (near-site) and Khonako-II (off-site), focusing on pedocomplexes (PCs) 4, 5, and 6 and their intercalated loess layers. High odd-over-even predominance (OEP) and average chain lengths (ACL) suggest that soil organic matter is predominantly derived from higher-order terrestrial plants, with better preservation in paleosols compared to loess layers. The inverse correlations of {delta}{superscript 1}3C with TOC and C/N reflect organic matter degradation, while elevated {delta}{superscript 1}N in paleosols suggests enhanced nitrogen cycling under warmer and drier conditions. Magnetic susceptibility and {delta}{superscript 1}3C trends reveal a progressive shift toward open grassland ecosystems since [~]0.8 Ma, with intensified pedogenesis during interglacial stages MIS 11, 13, and 15. The spatial distribution of PAH concentrations and lithic artifact densities further highlights human-environment interactions in the KLP locality. Obi-Mazar exhibits abundant lithic materials and high PAH levels, indicating repeated occupation and frequent burning in a resource-rich riverine setting. Kuldara exhibits moderate PAHs but minimal artifacts, whereas Khonako-II records only a minimal level of signals, reflecting a decrease in human impact with distance from the water source. Together, these findings demonstrate that Early Paleolithic hominins preferentially occupied ecologically stable, pedogenically developed zones during interglacial phases, contributing to localized fire regimes and shaping their landscapes. This study provides a refined paleoenvironmental framework for understanding hominin adaptations in Central Asia during the Pleistocene.

ecology↗