bioRxiv ScienceSearch

Biology subjects

Bicalho Saturnino, G.

Publications and source records attributed to Bicalho Saturnino, G..

2 recordsLinked to original sources

Comparing and Validating Automated Tools for Individualized Electric Field Simulations in the Human Head

Comparing electric field simulations from individualized head models against in-vivo recordings is important for direct validation of computational field modeling for transcranial brain stimulation and brain mapping techniques such as electro- and magnetoencephalography. This also helps to improve simulation accuracy by pinning down the factors having the largest influence on the simulations. Here we compare field simulations from four different automated pipelines, against intracranial voltage recordings in an existing dataset of 14 epilepsy patients. We show that ignoring uncertainty in the simulations leads to a strong bias in the estimated linear relationship between simulated and measured fields. In addition, even though the simulations between the pipelines differ notably, this is not reflected in the correlation with the measurements. We discuss potential reasons for this apparent mismatch and propose a new Bayesian regression analysis of the data that yields unbiased estimates enabling robust conclusions to be reached.

bioengineering

Efficient Electric Field Simulations for Transcranial Brain Stimulation

ObjectiveTranscranial magnetic stimulation (TMS) and transcranial electric stimulation (TES) modulate brain activity non-invasively by generating electric fields either by electromagnetic induction or by injecting currents via skin electrodes. Numerical simulations based on anatomically detailed head models of the TMS and TES electric fields can help us to understand and optimize the spatial stimulation pattern in the brain. However, most realistic simulations are still slow, and their numerical accuracy and the factors that influence it have not been evaluated in detail so far. ApproachWe present and validate a new implementation of the Finite Element Method (FEM) for TMS and TES that is based on modern algorithms and libraries. We also evaluate the convergence of the simulations and give estimates for the discretization errors. Main resultsComparisons with analytical solutions for spherical head models validate our new FEM implementation. It is five to ten times faster than previous implementations. The convergence results suggest that accurately capturing the tissue geometry in addition to choosing a sufficiently high mesh density is of fundamental importance for accurate simulations. SignificanceThe new implementation allows for a substantial increase in computational efficiency of TMS and TES simulations. This is especially relevant for applications such as the systematic assessment of model uncertainty and the optimization of multi-electrode TES montages. The results of our systematic error analysis allow the user to select the best tradeoff between model resolution and simulation speed for a specific application. The new FEM code will be made openly available as a part of our open-source software SimNIBS 3.0.

bioengineering