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Best, M.

Publications and source records attributed to Best, M..

2 recordsLinked to original sources

The Curious Case of the Golden Orb -- Relict of Relicanthus daphneae (Cnidaria, Anthozoa, Hexacorallia), a deep sea anemone

The discovery and collection of the enigmatic Golden Orb by the NOAA Ship Okeanos Explorer and ROV Deep Discover in deep Alaskan waters during 2023 has yielded substantial interest by the scientific and public communities alike. Initial field identifications of the specimen collected at 3,250 meters depth ranged from an egg mass to sponge to microbial biofilm. Here we characterize the biology and ecology of the Golden Orb, as well as other specimens of similar appearance identified since the collection of the original material. Through an integrative taxonomic approach including morphological analysis and genomic characterization of the Golden Orb, we identified the presence of cnidocytes of the spirocyst type (restricted to Hexacorallia), as well as metazoan DNA, from which we were able to derive complete mitochondrial genomes and Ultra Conserved Elements. These results indicate that the Golden Orb and a similar specimen from deep equatorial waters represent remnant cuticles belonging to the geographically widespread deep-sea anemone ally Relicanthus daphneae. We also document the presence of cuticle from a collected specimen of R. daphneae from the Southern Ocean and in situ photographic evidence of similar cuticles beneath living individuals. These findings underscore the extent to which the biodiversity and organismal biology of obscure deep sea fauna broadly remain unresolved and highlight the value of whole-specimen collections and rigorous taxonomic follow-up in telepresence-enabled ocean exploration.

zoology↗

Development and applications of a CRISPR activation system for facile genetic overexpression in Candida albicans

For the fungal pathogen Candida albicans, genetic overexpression readily occurs via a diversity of genomic alterations, such as aneuploidy and gain-of-function mutations, with important consequences for host adaptation, virulence, and evolution of antifungal drug resistance. Given the important role of overexpression on C. albicans biology, it is critical to develop and harness tools that enable the analysis of genes expressed at high levels in the fungal cell. Here, we describe the development, optimization, and application of a novel, single-plasmid-based CRISPR activation (CRISPRa) platform for targeted genetic overexpression in C. albicans, which employs a guide RNA to target an activator complex to the promoter region of a gene of interest, thus driving transcriptional expression of that gene. Using this system, we demonstrate the ability of CRISPRa to drive high levels of gene expression in C. albicans, and we assess optimal guide RNA targeting for robust and constitutive overexpression. We further demonstrate the specificity of the system via RNA sequencing. We highlight the application of CRISPRa to overexpress genes involved in pathogenesis and drug resistance and contribute towards the identification of novel phenotypes. Together, this tool will facilitate a broad range of applications for the study of C. albicans genetic overexpression.

microbiology↗