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Bernardi, G.

Publications and source records attributed to Bernardi, G..

At least 19 recordsLinked to original sources

Lack of vision shifts occipital dynamics toward a frontal-like regime and enhances top-down connectivity

The human occipital cortex is robustly repurposed for non-visual cognition after blindness, yet it remains unknown whether this functional reassignment is accompanied by a fundamental retuning of its intrinsic neural dynamics. Here, we recorded the electroencephalographic (EEG) responses to transcranial magnetic stimulation (TMS) of frontal and occipital areas to causally probe local cortical reactivity and large-scale effective connectivity in 16 blind individuals and 16 sighted controls. Direct perturbation of the occipital cortex revealed a profound shift in its intrinsic operating regime: compared with sighted participants, blind individuals exhibited faster, lower-amplitude TMS-evoked potentials that closely resembled the electrophysiological signature of the frontal cortex, which turned out to be comparable in the two populations. At the network level, source analyses further showed a specific enhancement of frontal-to-occipital effective connectivity, whereas occipital-to-frontal propagation remained unchanged. Importantly, among blind participants, faster occipital dynamics were associated with stronger frontal-driven occipital recruitment, directly linking local temporal retuning to enhanced top-down network influence. Together, these findings indicate that blindness reshapes both the intrinsic dynamics and large-scale integration of the occipital cortex. We propose that successful functional reassignment of the occipital cortex requires not only changes in cortical connectivity but also a tuning of the temporal operating regime toward a faster dynamics, enabling its embedding into distributed cognitive networks and providing a mechanistic framework for the functional reassignment of deafferented cortex.

neuroscience↗

Multi-omics data of a weedy coral species from Ulithi Atoll (Micronesia) to investigate the impact of human disturbance on coral health and resilience

BackgroundCoral reefs are among the most biodiverse ecosystems on Earth yet face an increasing risk of collapse under climate change and intensifying anthropogenic pressures. Although there is strong evidence that stressors such as overfishing, sedimentation, and wastewater runoff can drive shifts in coral community structure, few studies have investigated the molecular mechanisms underlying these shifts. Integrating data across multiple layers of biological organization, from the genome to the proteome and metabolome, offers a powerful approach to understanding how coral physiology and resilience are impacted by human activities. FindingsHere, we present high-coverage whole genome sequencing (Montipora only) together with untargeted metabolomic and proteomic datasets from three coral genera (Acropora, Pocillopora, and Montipora) that inhabit Ulithi Atoll, Yap State, FSM. Ulithi Atoll is an ideal system for investigating how anthropogenic pressures influence coral molecular ecology and adaptation, with extensive historical ecological data available through the long-term research program of the One People One Reef collaborative to connect multi-omics data with macroecological trends. Following data cleaning and quality control, all datasets exhibited minimal technical variation among samples, providing a comprehensive baseline for future research on coral resilience across a mosaic of natural and anthropogenic stressors. ConclusionsThese data provide a resource for examining how anthropogenic pressures influence coral physiology and resilience across environmental gradients. They also allow the identification of biomarkers of chronic stress that may inform the development of point-of-care diagnostic tools for coral health and contribute to evidence-based reef conservation and management strategies.

genomics↗

Immersive NREM dreaming preserves subjective sleep depth against declining sleep pressure

Perceived sleep depth is a key determinant of subjective sleep quality, traditionally thought to reflect unconsciousness and reduced cortical activation. Here, we combined high-density EEG with a serial awakening paradigm during NREM sleep to examine its neural and experiential correlates. As expected, deeper sleep was associated with reduced cortical activation, reflected in a lower high-to-low frequency power ratio. Yet, this relationship weakened in the presence of dreaming, indicating that immersive conscious experiences can counteract the impact of cortical activation on perceived depth. Indeed, perceived sleep depth was lowest during states with a mere sense of presence and highest during immersive dreaming or deep unconsciousness. Across the night, physiological sleep pressure and subjective sleepiness declined, but perceived sleep depth rose alongside increasing dream immersiveness. These results challenge the view that deep sleep stems solely from reduced brain activity and suggest that immersive dreaming sustains perceived sleep depth as homeostatic pressure wanes.

neuroscience↗

The semantics of dreams

Dreams are universal yet deeply personal experiences. While memory and personal concerns influence dream content, the impact of other individual, generalizable traits remains poorly understood. To address this gap, we built a multimodal dataset including dream and wakefulness reports, alongside demographic, psychometric, cognitive, and sleep-related measures in a large adult cohort. Natural language processing characterized the semantic features that quantitatively distinguish dream from wakefulness reports, with this distinction significantly modulated by individual-specific factors. Longitudinal and cross-sample analyses further demonstrated that major external events, such as the COVID-19 pandemic, affect dream content, leaving lasting traces. Overall, the findings highlight a dynamic interplay between stable individual traits and external events in shaping dream experiences, offering novel insights into the cognitive and emotional architecture of dreaming.

neuroscience↗

Thalamic involvement defines distinct slow-wave subtypes in NREM sleep

Slow waves (0.5-4 Hz) are a key feature of non-rapid-eye-movement (NREM) sleep, traditionally believed to arise from neocortical circuits. However, growing evidence suggests that subcortical structures, particularly the thalamus, may play a crucial role in initiating and synchronizing slow waves. We tested the hypothesis that single slow waves may arise from distinct cortico-cortical and thalamo-cortical mechanisms using simultaneous EEG-fMRI in healthy adults. Spatial mapping based on thalamic fMRI responses revealed two types of slow waves. The first type (C1) characterized by an early thalamic fMRI-signal increase, corresponded to large, efficiently synchronized waves associated with sleep spindles and with markers of higher arousal and autonomic activation. The second type (C2) is marked by an initial negative fMRI response and corresponds to smaller slow waves potentially resulting from cortico-cortical synchronization. These waves occur more often during phases of stable NREM sleep. These findings highlight distinct slow-wave subtypes with different thalamic involvement and, potentially, synchronization mechanisms.

neuroscience↗

Highly effective verified lucid dream induction using combined cognitive-sensory training and wearable EEG: a multi-centre study

Lucid dreaming occurs when one is aware of dreaming while asleep. While lucid dreaming can occur spontaneously, it remains rare. This multi-center study (Netherlands, Italy, Canada) tested a combined induction approach integrating senses-initiated lucid dreaming (SSILD) with targeted lucidity reactivation in a large sample of participants with varying lucid dreaming experience. Sixty participants (33 F; 26.5 {+/-}6.2 years old) completed two morning naps in the sleep laboratory. Participants received pre-sleep SSILD training paired with visual, auditory, and tactile cues that were then reintroduced in REM sleep, with stimulation and sham conditions counterbalanced. Lucidity and cue perception were verified using intentional eye movements from within the dream (signal-verified lucid dream, SVLD). SVLDs occurred in 31 participants (51.7%) across both naps. Subjective lucidity occurred in 63 naps (52.5%), including 40 SVLDs (33.3%) with no difference between stimulation (38.3%) and sham (28.3%) conditions. However, SVLD duration and number of predefined eye movements were higher with sensory cueing. Cues were perceived within sleep in most cued REM periods (71.1%), sometimes acting as lucidity signals (39.1% of stim SVLDs) and occasionally disrupting sleep (23.7% of cued periods). Overall, our combined cognitive-sensory induction method produced relatively high lucid dreaming rates, even in participants who rarely experience them. While cues were sometimes perceived as lucidity signals and may help prolong lucid episodes, our results do not show clear benefits of REM cueing over SSILD training alone. Further refinement of these methods may support clinical applications and deepen insight into consciousness and sensory processing during sleep.

neuroscience↗

The individual determinants of morning dream recall

Evidence suggests that (almost) everyone dreams during their sleep and may actually do so for a large part of the night. Yet, dream recall shows large interindividual variability. Understanding the factors that influence dream recall is crucial for advancing our knowledge regarding dreams origin, significance, and functions. Here, we tackled this issue by prospectively collecting dream reports along with demographic information and psychometric, cognitive, actigraphic, and electroencephalographic measures in 204 healthy adults (18-70 y, 113 females). We found that attitude towards dreaming, proneness to mind wandering, and sleep patterns are associated with the probability of reporting a dream upon morning awakening. The likelihood of recalling dream content was predicted by age and vulnerability to interference. Moreover, dream recall appeared to be influenced by night-by-night changes in sleep patterns and showed seasonal fluctuations. Our results provide an account for previous observations regarding inter- and intra-individual variability in morning dream recall.

neuroscience↗

Cardiovascular responses to natural and auditory evoked slow waves predict post-sleep cardiac function

The interplay between slow-wave sleep and cardiovascular health is increasingly recognized. Our prior research showed that auditory-enhanced slow waves can boost cardiac function, yet the mechanisms behind this remain unclear. Advancing these findings, our current analysis dissected the effects of two slow wave types on cardiovascular function, using data from 18 middle-aged men across three nights. We found that the strength of heart rate and blood pressure responses concurrent with slow waves predicts cardiac function post-sleep. Notably, we identified that highly synchronized type I slow waves, as opposed to lower-amplitude type II slow waves, primarily co-occur with these cardiovascular pulsations. While auditory stimulation enhances both types of slow waves, they exhibit distinct temporal dynamics, pointing to different underlying biological mechanisms. This study crucially addresses how distinct slow wave types can affect cardiovascular function, implying that targeted slow wave stimulation could be a strategic approach to improve heart health.

neuroscience↗

Whole genome assembly and annotation of the King Angelfish (Holacanthus passer) gives insight into the evolution of marine fishes of the Tropical Eastern Pacific

Holacanthus angelfishes are some of the most iconic marine fishes of the Tropical Eastern Pacific (TEP). However, very limited genomic resources currently exist for the genus. In this study we: i) assembled and annotated the nuclear genome of the King Angelfish (Holacanthus passer), and ii) examined the demographic history of H. passer in the TEP. We generated 43.8 Gb of ONT and 97.3 Gb Illumina reads representing 75X and 167X coverage, respectively. The final genome assembly size was 583 Mb with a contig N50 of 5.7 Mb, which captured 97.5% complete Actinoterygii Benchmarking Universal Single-Copy Orthologs (BUSCOs). Repetitive elements account for 5.09% of the genome, and 33,889 protein-coding genes were predicted, of which 22,984 have been functionally annotated. Our demographic model suggests that population expansions of H. passer occurred prior to the last glacial maximum (LGM) and were more likely shaped by events associated with the closure of the Isthmus of Panama. This result is surprising, given that most rapid population expansions in both freshwater and marine organisms have been reported to occur globally after the LGM. Overall, this annotated genome assembly will serve as a resource to improve our understanding of the evolution of Holacanthus angelfishes while facilitating novel research into local adaptation, speciation, and introgression in marine fishes.

evolutionary biology↗

Maturation-dependent changes in cortical and thalamic activity during slow waves of light sleep: insights from a combined EEG-fMRI study

INTRODUCTIONStudies using scalp EEG have shown that slow waves (0.5-4 Hz), the most prominent hallmark of NREM sleep, undergo relevant changes from childhood to adulthood, mirroring brain structural modifications and the acquisition of cognitive skills. Here we used simultaneous EEG-fMRI to investigate the cortical and subcortical correlates of slow waves in school-age children and determine their relative developmental changes. METHODSWe analyzed data from 14 school-age children with self-limited focal epilepsy of childhood who fell asleep during EEG-fMRI recordings. Brain regions associated with slow-wave occurrence were identified using a voxel-wise regression that also modeled interictal epileptic discharges and sleep spindles. At the group level, a mixed-effects linear model was used. The results were qualitatively compared with those obtained from 2 adolescents with epilepsy and 17 healthy adults. RESULTSSlow waves were associated with hemodynamic-signal decreases in bilateral somatomotor areas. Such changes extended more posteriorly relative to those in adults. Moreover, the involvement of areas belonging to the default mode network changes as a function of age. No significant hemodynamic responses were observed in subcortical structures. However, we identified a significant correlation between age and thalamic hemodynamic changes. CONCLUSIONSPresent findings indicate that the somatomotor cortex may have a key role in slow-wave expression throughout the lifespan. At the same time, they are consistent with a posterior-to-anterior shift in slow-wave distribution mirroring brain maturational changes. Finally, our results suggest that slow-wave changes may not reflect only neocortical modifications but also the maturation of subcortical structures, including the thalamus. Statement of significanceLow spatial resolution of conventional EEG has widely limited the possibility of accurately determining in humans the role of different brain structures in the expression of sleep slow waves throughout development. Here, for the first time, we took advantage of a simultaneous EEG-fMRI approach to accurately describe the cortical and subcortical hemodynamic correlates of sleep slow waves in a sample of 14 school-aged children. In order to elucidate age-dependent changes, we qualitatively compared present findings with those previously obtained in a group of adults. Overall our results have important implications for the understanding of how cortico-cortical and subcortico-cortical interactions shape sleep slow waves across development.

neuroscience↗

Chromosome-level genome of the three-spot damselfish, Dascyllus trimaculatus

Damselfishes (Family: Pomacentridae) are a group of ecologically important, primarily coral reef fishes that include over 400 species. Damselfishes have been used as model organisms to study recruitment (anemonefishes), the effects of ocean acidification (spiny damselfish), population structure and speciation (Dascyllus). The genus Dascyllus includes a group of small bodied species, and a complex of relatively larger bodied species, the Dascyllus trimaculatus species complex that comprises several species including D. trimaculatus itself. The three-spot damselfish, D. trimaculatus is a widespread and common coral reef fish species found across the tropical Indo-Pacific. Here we present the first genome assembly of this species. This assembly contains 910 Mb, 90% of the bases are in 24 chromosome-scale scaffolds, and the BUSCO score of the assembly is 97.9%. Our findings confirm previous reports of a karyotype of 2n = 47 in D. trimaculatus in which one parent contributes 24 chromosomes and the other 23. We find evidence that this karyotype is the result of a heterozygous Robertsonian fusion. We also find that the D. trimaculatus chromosomes are each homologous with single chromosomes of the closely related clownfish species, Amphiprion percula. This assembly will be a valuable resource in the population genomics and conservation of Damselfishes, and continued studies of the karyotypic diversity in this clade.

genomics↗

Short-term monocular deprivation boosts neural responsiveness to audio-visual events for the undeprived eye

A brief period of monocular deprivation (MD) induces short-term plasticity of the adult visual system. Whether MD elicits changes beyond visual processing is yet unclear. Here, we assessed the specific impact of MD on multisensory processes. Neural oscillations associated with visual and audio-visual processing were measured for both the deprived and the undeprived eye. Results revealed that MD changed neural activities associated with unimodal and multisensory processes in an eye-specific manner. Selectively for the deprived eye, alpha activity was reduced within the first 150 ms of visual processing. Conversely, gamma activity was enhanced in response to audio-visual events only for the undeprived eye within 100-300 ms after stimulus onset. The analysis of gamma responses to unimodal auditory events revealed that MD elicited a crossmodal upweighting for the undeprived eye. Distributed source modeling suggested that the right parietal cortex played a major role in all neural effects induced by MD. Finally, visual and audio-visual processing alterations emerged selectively for the induced (but not the evoked) component of the neural oscillations, indicating a major role of feedback connectivity. These findings support a model in which MD increases excitability to visual events for the deprived eye and to audio-visual and auditory events for the undeprived eye. On the one hand, these results reveal the causal impact of MD on both unisensory and multisensory processes but with distinct frequency-specific profiles. On the other hand, they highlight the feedback nature of short-term neural plasticity. Overall this study shed light on the high flexibility and interdependence of unimodal and multisensory functions. Highlights- We unveiled the impact of temporary MD on visual and audio-visual processing - MD enhanced visual excitability for the deprived eye - MD boosted neural responses to audio-visual events for the undeprived eye - Analyses of auditory processing revealed crossmodal effects following MD - Short-term MD primarily affects induced, non-phase-locked, oscillatory activity

neuroscience↗

Local increases in sleep-like activity predict the occurrence of emotion suppression failures

Emotion self-regulation relies both on cognitive and behavioral strategies implemented to modulate the subjective experience and/or the behavioral expression of a given emotion. While it is known that a network encompassing fronto-cingulate and parietal brain areas is engaged during successful emotion regulation, the functional mechanisms underlying failures in emotion suppression are still unclear. In order to investigate this issue, we analyzed video and high-density EEG recordings of nineteen healthy adult subjects during an emotion suppression (ES) and a free expression (FE) task performed on two consecutive days. Changes in facial expression during ES, but not FE, were preceded by local increases in sleep-like activity (1-4Hz) in in brain areas responsible for emotional suppression, including bilateral anterior insula and anterior cingulate cortex, and in right middle/inferior frontal gyrus (p<0.05, corrected). Moreover, shorter sleep duration the night prior to the ES experiment correlated with the number of behavioral errors (p=0.01) and tended to be associated with higher frontal sleep-like activity during emotion suppression failures (p=0.05). These results indicate that local sleep-like activity may represent the cause of emotion suppression failures in humans, and may offer a functional explanation for previous observations linking lack of sleep, changes in frontal activity and emotional dysregulation.

neuroscience↗

Cortical and subcortical hemodynamic changes during human sleep slow waves

EEG slow waves, the hallmarks of NREM sleep, are closely linked to the restorative function of sleep and their regional cortical distribution reflects plasticity- and learning-related processes. Here we took advantage of simultaneous EEG-fMRI recordings to map cortical and subcortical hemodynamic (BOLD) fluctuations time-locked to sleep slow waves. Recordings were performed in twenty healthy adults during an afternoon nap. Slow waves were associated with BOLD-signal increases in the brainstem and in portions of thalamus and cerebellum characterized by preferential functional connectivity with limbic and somatomotor areas, respectively. At the cortical level, significant BOLD-signal decreases were found in several areas, including insula and somatomotor cortex, and were preceded by slow signal increases that peaked around slow-wave onset. EEG slow waves and BOLD fluctuations showed similar cortical propagation patterns, from centro-frontal to temporo-occipital cortices. These regional patterns of hemodynamic-electrical coupling are consistent with theoretical accounts of the functions of sleep slow waves.

neuroscience↗

Integrity of corpus callosum is essential for the cross-hemispheric propagation of sleep slow waves: a high-density EEG study in split-brain patients

The slow waves of NREM-sleep (0.5-4Hz) reflect experience-dependent plasticity and play a direct role in the restorative functions of sleep. Importantly, slow waves behave as traveling waves and their propagation is assumed to reflect the structural properties of white matter connections. Based on this assumption, the corpus callosum (CC) may represent the main responsible for cross-hemispheric slow wave propagation. To verify this hypothesis, here we studied a group of patients who underwent total callosotomy due to drug-resistant epilepsy. Overnight high-density (hd)-EEG recordings (256 electrodes) were performed in five totally callosotomized in-patients (CP; 40-53y, 2F), in three control non-callosotomized neurological in-patients (NP; 44-66y, 2F, 1M epileptic), and in an additional sample of 24 healthy adult subjects (HS; 20-47y, 13F). Data were inspected to select NREM-sleep epochs and artefactual or non-physiological activity was rejected. Slow waves were detected using an automated algorithm and their properties and propagation patterns were computed. For each slow wave parameter and for each patient, the relative z-score and the corresponding p-value were calculated with respect to the distribution represented by the HS-group. Group differences were considered significant only when a Bonferroni corrected P < 0.05 was observed in all the CP and in none of the NP. A regression-based adjustment was used to exclude potential confounding effects of age. Slow wave density, amplitude, slope and propagation speed did not differ across CP and HS. In all CP slow waves displayed a significantly reduced probability of cross-hemispheric propagation and a stronger inter-hemispheric asymmetry. Moreover, we found that the incidence of large slow waves tended to differ across hemispheres within individual NREM epochs, with a relative predominance of the right over the left hemisphere in both CP and HS. The absolute magnitude of this inter-hemispheric difference was significantly greater in CP relative to HS. This effect did not depend on differences in slow wave origin within each hemisphere across groups. Present results indicate that the integrity of the CC is essential for the cross-hemispheric traveling of sleep slow waves, supporting the assumption of a direct relationship between white matter structural integrity and cross-hemispheric slow wave propagation. Our findings also imply a prominent role of cortico-cortical connections, rather than cortico-subcortico-cortical loops, in slow wave cross-hemispheric synchronization. Finally, this data indicate that the lack of the CC does not lead to differences in sleep depth, in terms of slow wave generation/origin, across brain hemispheres.

neuroscience↗

Visual imagery and visual perception induce similar changes in occipital slow waves of sleep

Previous studies have shown that regional slow wave activity (SWA) during NREM-sleep is modulated by prior experience and learning. While this effect has been convincingly demonstrated for the sensorimotor domain, attempts to extend these findings to the visual system have provided mixed results. Here we asked whether depriving subjects of external visual stimuli during daytime would lead to regional changes in slow waves during sleep and whether the degree of internal visual stimulation (spontaneous imagery) would influence such changes. In two 8h-long sessions spaced one-week apart, twelve healthy volunteers either were blindfolded while listening to audiobooks or watched movies (control condition), after which their sleep was recorded with high-density EEG. We found that during NREM-sleep the number of small, local slow waves in the occipital cortex decreased after listening with blindfolding relative to movie watching in a way that depended on the degree of visual imagery subjects reported during blindfolding: subjects with low visual imagery showed a significant reduction of occipital sleep slow waves, while those who reported a high degree of visual imagery did not. We also found a positive relationship between the reliance on visual imagery during blindfolding and audiobook listening and the degree of correlation in sleep SWA between visual areas and language-related areas. These preliminary results demonstrate that short-term alterations in visual experience may trigger slow wave changes in cortical visual areas. Furthermore, they suggest that plasticity-related EEG changes during sleep may reflect externally induced ( bottom-up) visual experiences, as well as internally generated ( top-down) processes.

neuroscience↗

EEG functional connectivity metrics wPLI and wSMI account for distinct types of brain functional interactions

Functional connectivity (FC) estimation methods are extensively used in neuroimaging to measure brain inter-regional interactions. The weighted Phase Lag Index (wPLI) and the weighted Symbolic Mutual Information (wSMI) represent relatively robust exemplars of spectral (wPLI) and information-theoretic (wSMI) connectivity measures that recently gained increased popularity due to their relative immunity to volume conduction. wPLI and wSMI are posited to have different sensitivity to linear and nonlinear relationships between neural sources, but their performance has never been directly compared. Here, using simulated high-density (hd-)EEG data, we evaluated the accuracy of these two metrics for detecting distinct types of regional interdependencies characterised by different combinations of linear and nonlinear components. Our results demonstrate that while wPLI performs generally better at detecting functional couplings presenting a mixture of linear and nonlinear interdependencies, only wSMI is able to detect exclusively nonlinear interaction dynamics. To evaluate the potential impact of these differences on real experimental data, we computed wPLI and wSMI connectivity in hd-EEG recordings of 12 healthy adults obtained in wakefulness and deep (N3-)sleep. While both wPLI and wSMI revealed a relative decrease in alpha-connectivity during sleep relative to wakefulness, only wSMI identified a relative increase in theta-connectivity, while wPLI detected an increase in delta-connectivity, likely reflecting the occurrence of traveling slow waves. Overall, our findings indicate that wPLI and wSMI provide distinct but complementary information about functional brain connectivity, and that their combined use could advance our knowledge of neural interactions underlying different behavioural states.

neuroscience↗

Regional low-frequency oscillations in human rapid-eye movement sleep

Although the EEG slow wave of sleep is typically considered to be a hallmark of Non Rapid Eye Movement (NREM) sleep, recent work in mice has shown that slow waves can also occur in REM sleep. Here we investigated the presence and cortical distribution of low-frequency (1-4 Hz) oscillations in human REM sleep by analyzing high-density EEG sleep recordings obtained in 28 healthy subjects. We identified two clusters of low-frequency oscillations with distinctive properties: 1) a fronto-central cluster characterized by [~]2.5-3.0 Hz, relatively large, notched delta waves (so-called sawtooth waves) that tended to occur in bursts, were associated with increased gamma activity and rapid eye movements, and upon source modeling, displayed an occipito-temporal and a fronto-central component; and 2) a medial occipital cluster characterized by more isolated, slower (<2 Hz) and smaller waves that were not associated with rapid eye movements, displayed a negative correlation with gamma activity and were also found in NREM sleep. Thus, low-frequency oscillations are an integral part of REM sleep in humans, and the two identified subtypes (sawtooth and medial-occipital slow waves) may reflect distinct generation mechanisms and functional roles. Sawtooth waves, which are exclusive to REM sleep, share many characteristics with ponto-geniculo-occipital (PGO) waves described in animals and may represent the human equivalent or a closely related event while medio-occipital slow waves appear similar to NREM sleep slow waves.

neuroscience↗