Biology subjects

Bastian, A.

Publications and source records attributed to Bastian, A..

3 recordsLinked to original sources

bioRxiv2023

Optimal reaching subject to computational and physical constraints reveals structure of the sensorimotor control system

Optimal feedback control provides an abstract framework describing the architecture of the sensorimotor system without prescribing implementation details such as what coordinate system to use, how feedback is incorporated, or how to accommodate changing task complexity. We investigate how such details are determined by computational and physical constraints by creating a model of the upper limb sensorimotor system in which all connection weights between neurons, feedback, and muscles are unknown. By optimizing these parameters with respect to an objective function, we find that the model exhibits a preference for an intrinsic (joint angle) coordinate representation of inputs and feedback and learns to calculate a weighted feedforward and feedback error. We further show that complex reaches around obstacles can be achieved by augmenting our model with a path-planner based on via points. The path-planner revealed "avoidance" neurons that encode directions to reach around obstacles, and "placement" neurons that make fine-tuned adjustments to via point placement. Our results demonstrate the surprising capability of computationally constrained systems and highlight new characteristics of the sensorimotor system.

neuroscience↗

bioRxiv2021

Vocal correlates of arousal in bottlenose dolphins (Tursiops spp.) in human care

Human-controlled regimes can entrain behavioural responses and may impact animal welfare. Therefore, understanding the impact of schedules on animal behaviour can be a valuable tool to improve welfare, however information on overnight behaviour and behaviour in the absence of husbandry staff remains rare. Bottlenose dolphins (Tursiops spp.) are highly social marine mammals and the most common cetacean found in captivity. They communicate using frequency modulated signature whistles which are individually distinctive and used as a contact call. We investigated the vocal behaviour of ten dolphins housed in three social groups at uShaka Sea World dolphinarium to determine how acoustic behavioural patterns link to dolphinarium routines. Investigation focused on overnight behaviour, housing decisions, weekly patterns, and transitional periods between presence and absence of husbandry staff. Recordings were made from 17h00 - 07h00 over 24 nights, spanning May to August 2018. Whistle production rate decreased soon after husbandry staff left the facility, was low over night, and increased upon arrival. Results indicated elevate arousal states associated with the morning arrival and presence of husbandry staff and heightened excitement associated with feeding. Housing in pool configurations which limited visual contact between certain groups were characterised by lower vocal production rates. Production of signature whistles was greater over the weekends compared to weekdays however total whistle production did not differ between weekends and weekdays. Heightened arousal associated with staff arrival was reflected in the structural characteristics of signature whistles, particularly maximum frequency, frequency range and number of whistle loops. Overall, these results revealed a link between scheduled activity and associated behavioural responses, which can be used as a baseline for future welfare monitoring where changes in normal behaviour may reflect shifts in welfare state.

animal behavior and cognition↗

bioRxiv2019

Cell non-autonomous interactions during non-immune stromal progression in the breast tumor microenvironment

SummaryThe breast tumor microenvironment of primary and metastatic sites is a complex milieu of differing cell populations, consisting of tumor cells and the surrounding stroma. Despite recent progress in delineating the immune component of the stroma, the genomic expression landscape of the non-immune stroma (NIS) population and their role in mediating cancer progression and informing effective therapies are not well understood. Here we obtained 52 cell-sorted NIS and epithelial tissue samples across 37 patients from i) normal breast, ii) normal breast adjacent to primary tumor, iii) primary tumor, and iv) metastatic tumor sites. Deep RNA-seq revealed diverging gene expression profiles as the NIS evolves from normal to metastatic tumor tissue, with intra-patient normal-primary variation comparable to inter-patient variation. Significant expression changes between normal and adjacent normal tissue support the notion of a cancer field effect, but extended out to the NIS. Most differentially expressed protein-coding genes and lncRNAs were found to be associated with pattern formation, embryogenesis, and the epithelial-mesenchymal transition. We validated the protein expression changes of a novel candidate gene, C2orf88, by immunohistochemistry staining of representative tissues. Significant mutual information between epithelial ligand and NIS receptor gene expression, across primary and metastatic tissue, suggests a unidirectional model of molecular signaling between the two tissues. Furthermore, survival analyses of 827 luminal breast tumor samples demonstrated the predictive power of the NIS gene expression to inform clinical outcomes. Together, these results highlight the evolution of NIS gene expression in breast tumors and suggest novel therapeutic strategies targeting the microenvironment.

cancer biology↗