bioRxiv Science⌕ Search

Biology subjects

Bassuk, A.

Publications and source records attributed to Bassuk, A..

2 recordsLinked to original sources

Artificial Intelligence's Contribution to Biomedical Literature Search: Revolutionizing or Complicating?

There is a growing number of articles about conversational AI (i.e., ChatGPT) for generating scientific literature reviews and summaries. Yet, comparative evidence lags its wide adoption by many clinicians and researchers. We explored ChatGPTs utility for literature search from an end-user perspective through the lens of clinicians and biomedical researchers. We quantitatively compared basic versions of ChatGPTs utility against conventional search methods such as Google and PubMed. We further tested whether ChatGPT user-support tools (i.e., plugins, web-browsing function, prompt-engineering, and custom-GPTs) could improve its response across four common and practical literature search scenarios: (1) high-interest topics with an abundance of information, (2) niche topics with limited information, (3) scientific hypothesis generation, and (4) for newly emerging clinical practices questions. Our results demonstrated that basic ChatGPT functions had limitations in consistency, accuracy, and relevancy. User-support tools showed improvements, but the limitations persisted. Interestingly, each literature search scenario posed different challenges: an abundance of secondary information sources in high interest topics, and uncompelling literatures for new/niche topics. This study tested practical examples highlighting both the potential and the pitfalls of integrating conversational AI into literature search processes, and underscores the necessity for rigorous comparative assessments of AI tools in scientific research. Author SummaryAs generative Artificial Intelligence (AI) tools become increasingly functional, the promise of this technology is creating a wave of excitement and anticipation around the globe including the wider scientific and biomedical community. Despite this growing excitement, researchers seeking robust, reliable, reproducible, and peer-reviewed findings have raised concerns about AIs current limitations, particularly in spreading and promoting misinformation. This emphasizes the need for continued discussions on how to appropriately employ AI to streamline the current research practices. We, as members of the scientific community and also end-users of conversational AI tools, seek to explore practical incorporations of AI for streamlining research practices. Here, we probed text-based research tasks--scientific literature mining-- can be outsourced to ChatGPT and to what extent human adjudication might be necessary. We tested different models of ChatGPT as well as augmentations such as plugins and custom GPT under different contexts of biomedical literature searching. Our results show that though at present, ChatGPT does not meet the level of reliability needed for it to be widely adopted for scientific literature searching. However, as conversational AI tools rapidly advance (a trend highlighted by the development of augmentations in this article), we envision a time when ChatGPT can become a great time saver for literature searches and make scientific information easily accessible.

scientific communication and education↗

Missense mutations in the MLKL brace region lead to lethal neonatal inflammation in mice and are present in high frequency in humans.

We have isolated a mouse strain with a single missense mutation in the gene encoding MLKL, the essential effector of necroptotic cell death. The resulting substitution lies within the two-helix brace and confers constitutive, RIPK3 independent, killing activity to MLKL. Mice homozygous for MlklD139V develop lethal inflammation within days of birth, implicating the salivary glands and pericardium as hotspots for necroptosis and inflammatory infiltration. The normal development of MlklD139V homozygotes until birth, and the absence of any overt phenotype in heterozygotes provides important in vivo precedent for the capacity of cells to clear activated MLKL. These observations offer an important insight into the potential disease-modulating roles of three common human MLKL polymorphisms that encode amino acid substitutions within or adjacent to the brace region. Compound heterozygosity of these variants is found at up to 12-fold the expected frequency in patients that suffer from a pediatric autoinflammatory disease, CRMO.

cell biology↗