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Bassi, K.

Publications and source records attributed to Bassi, K..

2 recordsLinked to original sources

Saturation, Task Error, and Feedback Timing Shape Early Implicit Adaptation

Motor adaptation is essential for maintaining coordination and precision in daily activities. Implicit motor adaptation--adaptation that occurs without conscious awareness--is thought to be primarily driven by sensory prediction errors. Here, we investigated how rapidly these unconscious changes in reaching behavior emerge as a function of error magnitude and the availability of task error signals. To this end, we employed a single-trial learning (STL) paradigm within a classical visuomotor rotation task. Participants made center-out reaching movements to either small (dot) or large (arc) targets while experiencing single perturbation trials with cursor rotations ranging from 1{degrees} to 90{degrees}, each followed by an aligned washout trial. By manipulating target size, we systematically modulated the presence of task error while holding sensory prediction error constant. We further compared these early implicit changes with those observed during standard prolonged adaptation to a fixed 20{degrees} rotation across >100 trials. Our results show that implicit adaptation emerges rapidly, even after a single exposure to small perturbations, and follows a saturating, fixed-rate response profile. Importantly, the magnitude of single-trial adaptation was greater when task error was present (small targets) compared with conditions in which only sensory prediction error was available (large targets). Moreover, STL-derived parameters moderately predicted the initial phase of adaptation during prolonged learning, suggesting that STL captures core dynamics of early implicit processes. These findings provide new insight into the mechanistic principles governing implicit motor adaptation. By identifying the parameters that drive early-stage error-based learning, this work refines current models of sensorimotor learning and highlights potential strategies for designing targeted training or rehabilitation protocols that leverage rapid adaptation processes to enhance motor performance and recovery.

neuroscience↗

The blobulator: a webtool for identification andvisual exploration of hydrophobic modularity inprotein sequences

While contiguous subsequences of hydrophobic residues are essential to protein structure and function, as in the hydrophobic core and transmembrane regions, there are no current bioinformatics tools for module identification focused on hydrophobicity. To fill this gap, we created the blobulator toolkit for detecting, visualizing, and characterizing hydrophobic modules in protein sequences. This toolkit uses our previously developed algorithm, blobulation, which was critical in both interpreting intra-protein contacts in a series of intrinsically disordered protein simulations [1] and defining the "local context" around disease-associated mutations across the human proteome [2]. The blobulator toolkit provides accessible, interactive, and scalable implementations of blobulation. These are available via a webtool, a VMD plugin, and a command line interface. We highlight use cases for visualization, interaction analysis, and modular annotation through three example applications: a globular protein, two orthologous membrane proteins, and an IDP. The blobulator webtool can be found at www.blobulator.branniganlab.org, and the source code with pip installable command line tool, as well as the VMD plugin with installation instructions, can be found on GitHub at www.GitHub.com/BranniganLab/blobulator.

bioinformatics↗