Biology subjects

Barrow, L. N.

Publications and source records attributed to Barrow, L. N..

3 recordsLinked to original sources

bioRxiv2018

Deeply conserved susceptibility in a multi-host, multi-parasite system

Variation in susceptibility is ubiquitous in multi-host, multi-parasite assemblages, and can have profound implications for ecology and evolution. The extent to which susceptibility is phylogenetically conserved among hosts is poorly understood and has rarely been appropriately tested. We screened for haemosporidian parasites in 3983 birds representing 40 families and 523 species, spanning ~4500 meters elevation in the tropical Andes. To quantify the influence of host phylogeny on infection status, we applied Bayesian phylogenetic multilevel models that included a suite of environmental, spatial, temporal, life history, and ecological predictors. We found evidence of deeply-conserved susceptibility across the avian tree; host phylogeny explained substantial variation in infection rate, and results were robust to phylogenetic uncertainty. Our study suggests that susceptibility is governed, in part, by conserved, latent aspects of anti-parasite defense. This demonstrates the importance of deep phylogeny for understanding the outcomes of present-day ecological interactions.\n\nStatement of authorshipLNB, SMM, NM, and CCW designed the study; SMM, SCG, HLL, HS, TV, JDW, and CCW collected the data; LNB and NM analyzed the data; LNB, NM, and CCW wrote the paper with input from all authors.\n\nData accessibility statementSpecimen information is available from the Arctos database (arctosdb.org) and in supplementary tables (Appendix S1). Files used for analysis will be archived in Dryad. DOI: XXX.

evolutionary biology↗

bioRxiv2018

Genomic sequence capture of haemosporidian parasites: Methods and prospects for enhanced study of host-parasite evolution

Avian malaria and related haemosporidians (Plasmodium, [Para]Haemoproteus, and Leucocytoozoon) represent an exciting multi-host, multi-parasite system in ecology and evolution. Global research in this field accelerated after 1) the publication in 2000 of PCR protocols to sequence a haemosporidian mitochondrial (mtDNA) barcode, and 2) the development in 2009 of an open-access database to document the geographic and host ranges of parasite mtDNA haplotypes. Isolating haemosporidian nuclear DNA from bird hosts, however, has been technically challenging, slowing the transition to genomic-scale sequencing techniques. We extend a recently-developed sequence capture method to obtain hundreds of haemosporidian nuclear loci from wild bird samples, which typically have low levels of infection, or parasitemia. We tested 51 infected birds from Peru and New Mexico and evaluated locus recovery in light of variation in parasitemia, divergence from reference sequences, and pooling strategies. Our method was successful for samples with parasitemia as low as [~]0.03% (3 of 10,000 blood cells infected) and mtDNA divergence as high as 15.9% (one Leucocytozoon sample), and using the most cost-effective pooling strategy tested. Phylogenetic relationships estimated with >300 nuclear loci were well resolved, providing substantial improvement over the mtDNA barcode. We provide protocols for sample preparation and sequence capture including custom probe kit sequences, and describe our bioinformatics pipeline using aTRAM 2.0, PHYLUCE, and custom Perl and Python scripts. This approach can be applied to the tens of thousands of avian samples that have already been screened for haemosporidians, and greatly improve our understanding of parasite speciation, biogeography, and evolutionary dynamics.

genomics↗

bioRxiv2018

Ecology, Not Distance, Explains Community Composition in Parasites of Sky-Island Audubon’s Warblers

O_LIHaemosporidian parasites of birds are ubiquitous in terrestrial ecosystems, but their coevolutionary dynamics remain poorly understood. If species turnover in parasites occurs at a finer scale than species turnover in hosts, widespread hosts would encounter diverse parasites and potentially diversify as a result. Previous studies have shown that some wide-ranging hosts encounter varied haemosporidian communities throughout their range, and vice-versa. However, it remains difficult to test spatial patterns of diversity in this complex multi-host multi-parasite system because it remains inadequately surveyed.\nC_LIO_LIWe sought to understand how and why a community of avian haemosporidian parasites varies in abundance and composition across an array of eight sky islands in southwestern North America. We tested whether bird community composition, aspects of the environment, or geographic distance explain parasite species turnover in a widespread, generalist host.\nC_LIO_LIWe sampled 178 Audubons Warblers (Setophaga auduboni) along elevational transects in eight mountain ranges and screened them for haemosporidian mtDNA. We tested predictors of infection using generalized linear models (GLMs) and we tested predictors of bird- and parasite-community dissimilarity using generalized dissimilarity modeling (GDM).\nC_LIO_LIPredictors of infection differed by genus: Parahaemoproteus was predicted by elevation and climate, Leucocytozoon varied idiosyncratically among mountain ranges, and Plasmodium was unpredictable, but rare. Parasite species turnover was nearly three-fold higher than bird species turnover and was predicted by elevation, climate, and bird community composition, but not by geographic distance.\nC_LIO_LIHaemosporidian communities vary strikingly at spatial scales of hundreds of kilometers, across which the bird community varies only subtly. The finer spatial scale of turnover among parasites species implies that their ranges tend to be smaller than those of their hosts. Avian host species should encounter different parasite species in different parts of their ranges, resulting in spatially varying selection on host immune systems. Furthermore, the fact that parasite turnover was predicted by bird turnover implies that different species within a host community affect each others parasites, potentially facilitating indirect antagonistic effects.\nC_LI

ecology↗