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Barre, N.

Publications and source records attributed to Barre, N..

2 recordsLinked to original sources

Improving the monitoring of the invasive Blue Crab (Callinectes sapidus): combining environmental DNA and citizen observations

O_LIEarly detection is a crucial tool for identifying the spread of invasive species. C_LIO_LIIn this study, we validated a probe-based quantitative polymerase chain reaction (qPCR) assay for the detection of the invasive Blue Crab, Callinectes sapidus, in the Mediterranean Sea, using 22 initial eDNA environmental samples (eDNA) collected from three coastal lagoons. C_LIO_LIA subsequent large-scale eDNA sampling campaign (61 samples in 31 sites), conducted in collaboration with local stakeholders, was carried out to map the distribution of Callinectes sapidus along the Occitanie coastline (Western Mediterranean, France). C_LIO_LIUsing eDNA probe-based qPCR, Callinectes sapidus was detected in 32 out the 61 samples (52%), confirming its presence in 24 out of 31 sites surveyed, including the 13 lagoons where its occurrence had already been reported, as well as two additional lagoons and at sea where no prior records existed. C_LIO_LIOur results demonstrate the utility of eDNA probe-based qPCR for effective monitoring the invasive Blue Crab. The integration of eDNA analysis with citizen science observations enhances the monitoring framework, facilitating early detection and contributing to improved management strategies at the very beginning of species colonization when practical actions could be implemented. C_LI

ecology↗

Fast holographic scattering compensation for deep tissue biologicalimaging

Scattering in biological tissues is a major barrier for in vivo optical imaging of all but the most superficial structures. Progress toward overcoming the distortions caused by scattering in turbid media has been made by shaping the excitation wavefront to redirect power into a single point in the imaging plane. However, fast, non-invasive determination of the required wavefront compensation remains challenging. Here, we introduce a quickly converging algorithm for non-invasive scattering compensation, termed DASH, in which holographic phase stepping interferometry enables new phase information to be updated after each measurement. This leads to rapid improvement of the wavefront correction, forming a focus after just one measurement iteration and achieving an order of magnitude higher signal enhancement at this stage than the previous state-of-the-art. Using DASH, we demonstrate two-photon fluorescence imaging of microglia cells in highly turbid mouse hippocampal tissue down to a depth of 530 m.

biophysics↗