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Ballal, A.

Publications and source records attributed to Ballal, A..

2 recordsLinked to original sources

Unravelling the role of a disordered chaperone in adaptation to environmental stress

Intrinsically disordered proteins (IDPs) lack a stable tertiary structure, which enables them to mediate flexible molecular interactions. As the biochemical functions of IDPs remain poorly understood, their physiological roles are largely unknown, particularly in photosynthetic organisms. Herein, Alr0806, a conserved salinity-induced cyanobacterial IDP, was characterized from the nitrogen-fixing cyanobacterium Anabaena. Instead of the full-length protein predicted in databases, experimental analysis indicated this organism to express a shorter form of the Alr0806 protein, which was attributed to the mis-annotation of the translational start codon. Purified Alr0806, a highly thermostable protein, exhibited characteristic properties of highly disordered proteins, including anomalous migration on SDS-PAGE. Alr0806 displayed disorder-to-order transitions with decreasing pH, indicating structural flexibility. Notably, Alr0806 leveraged structural plasticity to function as a chaperone and molecular shield, protecting proteins from aggregation. Furthermore, consistent with this function, Anabaena strains deficient in Alr0806 showed compromised growth and diminished photosynthesis under standard conditions of growth or in response to salt/heat stress. These findings establish Alr0806 as a key player in cyanobacterial physiology and provide insights into the physiological functions of IDPs in photosynthetic organisms. HighlightAlr0806, a conserved cyanobacterial stress-induced intrinsically disordered protein, exhibits structural plasticity and functions as a molecular chaperone to support growth, photosynthesis and environmental stress tolerance.

molecular biology↗

Sparse epistatic patterns in the evolution of terpene synthases

We explore sequence determinants of enzyme activity and specificity in a major enzyme family of terpene synthases. Most enzymes in this family catalyze reactions that produce cyclic terpenes - complex hydrocarbons widely used by plants and insects in diverse biological processes such as defense, communication, and symbiosis. To analyze the molecular mechanisms of emergence of terpene cyclization, we have carried out in-depth examination of mutational space around (E)-{beta}-farnesene synthase, an Artemisia annua enzyme which catalyzes production of a linear hydrocarbon chain. Each mutant enzyme in our synthetic libraries was characterized biochemically, and the resulting reaction rate data was used as input to the Michaelis-Menten model of enzyme kinetics, in which free energies were represented as sums of one-amino-acid contributions and two-amino-acid couplings. Our model predicts measured reaction rates with high accuracy and yields free energy landscapes characterized by relatively few coupling terms. As a result, the Michaelis-Menten free energy landscapes have simple, interpretable structure and exhibit little epistasis. We have also developed biophysical fitness models based on the assumption that highly fit enzymes have evolved to maximize the output of correct products, such as cyclic products or a specific product of interest, while minimizing the output of byproducts. This approach results in a non-linear fitness landscape which is considerably more epistatic. Overall, our experimental and computational framework provides focused characterization of evolutionary emergence of novel enzymatic functions in the context of micro-evolutionary exploration of sequence space around naturally occurring enzymes.

evolutionary biology↗