Biology subjects

Balcerek, J.

Publications and source records attributed to Balcerek, J..

2 recordsLinked to original sources

bioRxiv2026

Lung adventitial fibroblasts support type 2 Tregs to shape the response to influenza infection

Viral pneumonias are lung infections that lead to both short- and long-term complications, including acute respiratory distress syndrome (ARDS) and pulmonary fibrosis. Lung stromal-immune interactions balance pathogen clearance with excessive immune-mediated injury, and healthy lung repair with necessary scarring. Here, we define the lung spatiotemporal stromal-immune response to Influenza A virus (IAV) infection, focusing on the underappreciated role of fibroblasts and their dynamic states. We used 3D quantitative microscopy and scRNAseq to identify IAV-driven fibroblast states, including inflammatory fibroblasts, profibrotic fibroblasts, and adventitial fibroblasts (AFs). Unexpectedly, loss of fibroblast TGF{beta} signaling led to early enhancement of immuno-modulatory AFs, driving activation of tissue-resident type 2 regulatory T cells (T2-Tregs) and ultimately improving lung functional outcomes. In vitro co-culture systems additionally revealed that AFs act as a niche to support T2-Tregs. Our data suggest an intimate fibroblast-immune crosstalk is required to temporally and spatially balance lung tissue inflammation and repair.

immunology↗

bioRxiv2023

Development of a robotic cluster for automated and scalable cell therapy manufacturing

The production of commercial autologous cell therapies such as chimeric antigen receptor T cells requires complex manual manufacturing processes. Skilled labor costs and challenges in manufacturing scale-out have contributed to high prices for these products. Here, we present a robotic system that uses industry-standard cell therapy manufacturing equipment to automate the steps involved in cell therapy manufacturing. The robotic cluster consists of a robotic arm and customized modules, allowing the robot to manipulate a variety of standard cell therapy instruments and materials such as incubators, bioreactors, and reagent bags. This system enables existing manual manufacturing processes to be rapidly adapted to robotic manufacturing, without having to adopt a completely new technology platform. Proof-of-concept for the robotic clusters expansion module was demonstrated by activating and expanding human CD8+ T cells. The robotic cultures showed comparable cell yields, viability, and identity to those manually performed. Such modular robotic solutions may support scale-up and scale-out of cell therapies that are developed using classical manual methods in academic laboratories and biotechnology companies.

bioengineering↗