Biology subjects

Baillet, S.

Publications and source records attributed to Baillet, S..

31 records · Page 2Linked to original sources

bioRxiv2022

Time-resolved parameterization of aperiodic and periodic brain activity

Macroscopic neural dynamics comprise both aperiodic and periodic signal components. Recent advances in parameterizing neural power spectra offer practical tools for evaluating these features separately. Although neural signals vary dynamically and express non-stationarity in relation to ongoing behaviour and perception, current methods yield static spectral decompositions. Here, we introduce Spectral Parameterization Resolved in Time (SPRiNT) as a novel method for decomposing complex neural dynamics into periodic and aperiodic spectral elements in a time- resolved manner. First, we demonstrate with naturalistic synthetic data SPRiNTs capacity to reliably recover time-varying spectral features. We emphasize SPRiNTs specific strengths compared to other time-frequency parameterization approaches based on wavelets. Second, we use SPRiNT to illustrate how aperiodic spectral features fluctuate across time in empirical resting-state electroencephalography data (n = 178), and relate the observed changes in aperiodic parameters over time to participants demographics and behaviour. Lastly, we use SPRiNT to demonstrate how aperiodic dynamics relate to movement behaviour in intracranial recordings in rodents. We foresee SPRiNT responding to growing neuroscientific interests in the parameterization of time-varying neural power spectra and advancing the quantitation of complex neural dynamics at the natural time scales of behaviour. Significance StatementThe new method and reported findings address a growing interest in neuroscience for research tools that can reliably decompose brain activity at the mesoscopic scale into interpretable components. We show that the new approach proposed is capable of tracking transient, dynamic spectral (aperiodic and periodic) components across time, both in synthetic data and in in vivo experimental data. We anticipate that this novel technique, SPRiNT, will enable new neuroscience inquiries that reconcile multifaceted neural dynamics with complex behaviour.

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bioRxiv2022

Tracking the dynamics of perisaccadic visual signals with magnetoencephalography

Many brain functions are difficult to localize, as they involve distributed networks that reconfigure themselves on short timescales. One example is the integration of oculomotor and visual signals that occurs with each eye movement: The brain must combine motor signals about the eye displacement with retinal signals, to infer the structure of the surrounding environment. Our understanding of this process comes primarily from single-neuron recordings, which are limited in spatial extent, or fMRI measurements, which have poor temporal resolution. We have therefore studied visual processing during eye movements, using magnetoencephalography (MEG), which affords high spatiotemporal resolution. Human subjects performed a task in which they reported the orientation of a visual stimulus while executing a saccade. After removal of eye movement artifacts, time-frequency analysis revealed a signal that propagated in the beta-frequency band from parietal cortex to visual cortex. This signal had the characteristics of perisaccadic "remapping", a neural signature of the integration of oculomotor and visual signals. These results reveal a novel mechanism of visual perception and demonstrate that MEG can provide a useful window into distributed brain functions.

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bioRxiv2022

Neuromaps: structural and functional interpretation of brain maps

Imaging technologies are increasingly used to generate high-resolution reference maps of brain structure and function. Modern scientific discovery relies on making comparisons between new maps (e.g. task activations, group structural differences) and these reference maps. Although recent data sharing initiatives have increased the accessibility of such brain maps, data are often shared in disparate coordinate systems (or "spaces"), precluding systematic and accurate comparisons among them. Here we introduce the neuromaps toolbox, an open-access software package for accessing, transforming, and analyzing structural and functional brain annotations. We implement two registration frameworks to generate high-quality transformations between four standard coordinate systems commonly used in neuroimaging research. The initial release of the toolbox features >40 curated reference maps and biological ontologies of the human brain, including maps of gene expression, neurotransmitter receptors, metabolism, neurophysiological oscillations, developmental and evolutionary expansion, functional hierarchy, individual functional variability, and cognitive specialization. Robust quantitative assessment of map-to-map similarity is enabled via a suite of spatial autocorrelation-preserving null models. By combining open-access data with transparent functionality for standardizing and comparing brain maps, the neuromaps software package provides a systematic workflow for comprehensive structural and functional annotation enrichment analysis of the human brain.

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bioRxiv2021

Mapping neurotransmitter systems to the structural and functional organization of the human neocortex

Neurotransmitter receptors support the propagation of signals in the human brain. How receptor systems are situated within macroscale neuroanatomy and how they shape emergent function remains poorly understood, and there exists no comprehensive atlas of receptors. Here we collate positron emission tomography data from >1 200 healthy individuals to construct a whole-brain 3-D normative atlas of 19 receptors and transporters across 9 different neurotransmitter systems. We find that receptor profiles align with structural connectivity and mediate function, including neurophysiological oscillatory dynamics and resting state hemodynamic functional connectivity. Using the Neurosynth cognitive atlas, we uncover a topographic gradient of overlapping receptor distributions that separates extrinsic and intrinsic psychological processes. Finally, we find both expected and novel associations between receptor distributions and cortical thinning patterns across 13 disorders. We replicate all findings in an independently collected autoradiography dataset. This work demonstrates how chemoarchitecture shapes brain structure and function, providing a new direction for studying multi-scale brain organization.

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bioRxiv2021

Mapping electromagnetic networks to haemodynamic networks in the human brain

Whole-brain neural communication is typically estimated from statistical associations among electromagnetic or haemodynamic time-series. The relationship between functional network architectures recovered from these two types of neural activity remains unknown. Here we map electromagnetic networks (measured using magnetoencephalography; MEG) to haemodynamic networks (measured using functional magnetic resonance imaging; fMRI). We find that the relationship between the two modalities is regionally heterogeneous and systematically follows the cortical hierarchy, with close correspondence in unimodal cortex and poor correspondence in transmodal cortex. Comparison with the BigBrain histological atlas reveals that electromagnetic-haemodynamic coupling is driven by laminar differentiation and neuron density, suggesting that the mapping between the two modalities can be explained by cytoarchitectural variation. Importantly, haemodynamic connectivity cannot be explained by electromagnetic activity in a single frequency band, but rather arises from the mixing of multiple neurophysiological rhythms. Correspondence between the two is largely driven by MEG functional connectivity at the beta (15-29 Hz) frequency band. Collectively, these findings demonstrate highly organized but only partly overlapping patterns of connectivity in MEG and fMRI functional networks, opening fundamentally new avenues for studying the relationship between cortical microarchitecture and multi-modal connectivity patterns.

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bioRxiv2021

Stability of spectral estimates in resting-state magnetoencephalography: recommendations for minimal data duration with neuroanatomical specificity

The principle of resting-state paradigms is appealing and practical for collecting data from impaired patients and special populations, especially if data collection times can be minimized. To achieve this goal, researchers need to ensure estimated signal features of interest are robust. In electro- and magnetoencephalography (EEG, MEG) we are not aware of studies of the minimal length of recording required to yield a robust one-session snapshot of the frequency-spectrum derivatives that are typically used to characterize the complex dynamics of the brains resting-state. We aimed to fill this knowledge gap by studying the stability of common spectral measures of resting-state MEG source time series obtained from large samples of single-session recordings from shared data repositories featuring different recording conditions and instrument technologies (OMEGA: N = 107; Cam-CAN: N = 50). We discovered that the rhythmic and arrhythmic spectral properties of intrinsic brain activity can be robustly estimated in most cortical regions when derived from relatively short recordings of 30-s to 120-s of resting-state data, regardless of instrument technology and resting-state paradigm. Using an adapted leave-one-out approach and Bayesian analysis, we also provide evidence that the stability of spectral features over time is unaffected by age, sex, handedness, and general cognitive function. In summary, short MEG sessions are sufficient to yield robust estimates of frequency-defined brain activity during resting-state. This study may help guide future empirical designs in the field, particularly when recording times need to be minimized, such as with patient or special populations.

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bioRxiv2021

MEG, myself, and I: individual identification from neurophysiological brain activity

Large, openly available datasets and current analytic tools promise the emergence of population neuroscience. The considerable diversity in personality traits and behaviour between individuals is reflected in the statistical variability of neural data collected in such repositories. This amount of variability challenges the sensitivity and specificity of analysis methods to capture the personal characteristics of a putative neural portrait. Recent studies with functional magnetic resonance imaging (fMRI) have concluded that patterns of resting-state functional connectivity can both successfully identify individuals within a cohort and predict some individual traits, yielding the notion of a neural fingerprint. Here, we aimed to clarify the neurophysiological foundations of individual differentiation from features of the rich and complex dynamics of resting-state brain activity using magnetoencephalography (MEG) in 158 participants. Akin to fMRI approaches, neurophysiological functional connectomes enabled the identification of individuals, with identifiability rates similar to fMRIs. We also show that individual identification was equally successful from simpler measures of the spatial distribution of neurophysiological spectral signal power. Our data further indicate that identifiability can be achieved from brain recordings as short as 30 seconds, and that it is robust over time: individuals remain identifiable from recordings performed weeks after their baseline reference data was collected. Based on these results, we can anticipate a vast range of further research and practical applications of individual differentiation from neural electrophysiology in personalized, clinical, and basic neuroscience.

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bioRxiv2020

Neurophysiological network dynamics of pitch change detection.

The detection of pitch changes is crucial to sound localization, music appreciation and speech comprehension, yet the brain network oscillatory dynamics involved remain unclear. We used time-resolved cortical imaging in a pitch change detection task. Tone sequences were presented to both typical listeners and participants affected with congenital amusia, as a model of altered pitch change perception. Our data show that tone sequences entrained slow (2-4 Hz) oscillations in the auditory cortex and inferior frontal gyrus, at the pace of tone presentations. Inter-regional signaling at this slow pace was directed from auditory cortex towards the inferior frontal gyrus and motor cortex. Bursts of faster (15-35Hz) oscillations were also generated in these regions, with directed influence from the motor cortex. These faster components occurred precisely at the expected latencies of each tone in a sequence, yielding a form of local phase-amplitude coupling with slower concurrent activity. The intensity of this coupling peaked dynamically at the moment of anticipated pitch changes. We clarify the mechanistic relevance of these observations in relation to behavior as, by task design, typical listeners outperformed amusic participants. Compared to typical listeners, inter-regional slow signaling toward motor and inferior frontal cortices was depressed in amusia. Also, the auditory cortex of amusic participants over-expressed tonic, fast-slow phase-amplitude coupling, pointing at a possible misalignment between stimulus encoding and internal predictive signaling. Our study provides novel insight into the functional architecture of polyrhythmic brain activity in auditory perception and emphasizes active, network processes involving the motor system in sensory integration.

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bioRxiv2020

Oscillatory entrainment of the Frequency Following Response in auditory cortical and subcortical structures

There is much debate about the existence and function of neural oscillatory entrainment mechanisms in the auditory system. The frequency-following response (FFR) is an index of neural periodicity encoding that can provide a vehicle to study entrainment in frequency ranges relevant to speech and music processing. Criteria for entrainment include the presence of post-stimulus oscillations and phase alignment between stimulus and endogenous activity. To test the hypothesis of entrainment, in experiment 1 we collected FFR data to a repeated syllable using magneto- (MEG) and electroencephalography in 20 healthy adults. We observed significant oscillatory activity after stimulus offset in auditory cortex and subcortical auditory nuclei, consistent with entrainment. In these structures the FFR fundamental frequency converged from a lower value over 100 ms to the stimulus frequency, consistent with phase alignment, and diverged to a lower value after offset, consistent with relaxation to a preferred frequency. In experiment 2, we tested how transitions between stimulus frequencies affected the MEG-FFR to a train of pure-tone pairs in 30 adults. We found that the FFR was affected by the frequency of the preceding tone for up to 40 ms at subcortical levels, and even longer durations at cortical levels. Our results suggest that oscillatory entrainment may be an integral part of periodic sound representation throughout the auditory neuraxis. The functional role of this mechanism is unknown, but it could serve as a fine-scale temporal predictor for frequency information, enhancing stability and reducing susceptibility to degradation that could be useful in real-life noisy environments.

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bioRxiv2019

Integrated Open-Source Software for Multiscale Electrophysiology

The methods for electrophysiology in neuroscience have evolved tremendously over the recent years with a growing emphasis on dense-array signal recordings. Such increased complexity and augmented wealth in the volume of data recorded, have not been accompanied by efforts to streamline and facilitate access to processing methods, which too are susceptible to grow in sophistication. Moreover, unsuccessful attempts to reproduce peer-reviewed publications indicate a problem of transparency in science. This growing problem could be tackled by unrestricted access to methods that promote research transparency and data sharing, ensuring the reproducibility of published results.\n\nHere, we provide a free, extensive, open-source software that provides data-analysis, data-management and multi-modality integration solutions for invasive neurophysiology. Users can perform their entire analysis through a user-friendly environment without the need of programming skills, in a tractable (logged) way. This work contributes to open-science, analysis standardization, transparency and reproducibility in invasive neurophysiology.

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bioRxiv2018

Spontaneous network activity accounts for variability in stimulus-induced gamma responses

Gamma range activity in human visual cortex is believed to play a major role in cognitive functions, such as selective attention. Although recent studies have revealed substantial variability in gamma activity, its origins are still unclear.\n\nWe investigated whether variability in stimulus-induced gamma activity is related to the spontaneous dynamics of resting-state networks using Hidden Markov Modelling. The magnetoencephalogram (MEG) of 15 healthy participants was recorded at rest and while they were performing a task involving a visual stimulus inducing strong, narrow-band gamma activity. Brain states were inferred from the tasks baseline periods and from resting-state recordings, respectively.\n\nOur results show how network states are related to the amplitude of stimulus-induced gamma responses. Across trials, we found an association between the amplitude of gamma responses and the brain state occurring immediately prior to stimulus presentation. Strong gamma responses followed a state characterized by prominent delta/theta oscillations in parieto-occipital regions and comparably weak alpha activity. Across subjects, the overall probability of visiting this state in the baseline period, i.e. the individual preference for this state, correlated positively with the amplitude of the trial-averaged gamma response. Remarkably, this relationship persisted when states were inferred from resting-state recordings rather than the tasks baseline.\n\nIn summary, both within- and across-subject variability in stimulus-induced gamma activity can in part be explained by the ongoing dynamics of whole-brain network states. Fast, pre-stimulus modulations of brain states account for differences between trials while stable, individual state preferences account for differences between subjects.

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bioRxiv2017

MEG-BIDS: an extension to the Brain Imaging Data Structure for magnetoencephalography

We present a significant extension of the Brain Imaging Data Structure (BIDS) to support the specific aspects of magnetoencephalography (MEG) data. MEG provides direct measurement of brain activity with millisecond temporal resolution and unique source imaging capabilities. So far, BIDS has provided a solution to structure the organization of magnetic resonance imaging (MRI) data, which nature and acquisition parameters are different. Despite the lack of standard data format for MEG, MEG-BIDS is a principled solution to store, organize and share the typically-large data volumes produced. It builds on BIDS for MRI, and therefore readily yields a multimodal data organization by construction. This is particularly valuable for the anatomical and functional registration of MEG source imaging with MRI. With MEG-BIDS and a growing range of software adopting the standard, the MEG community has a solution to minimize curation overheads, reduce data handling errors and optimize usage of computational resources for analytics. The standard also includes well-defined metadata, to facilitate future data harmonization and sharing efforts.

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bioRxiv2017

Imaging of neural oscillations with embedded inferential and group prevalence statistics.

Magnetoencephalography and electroencephalography (MEG, EEG) are essential techniques for studying distributed signal dynamics in the human brain. In particular, the functional role of neural oscillations remains to be clarified. Imaging methods need to identify distinct brain regions that concurrently generate oscillatory activity, with adequate separation in space and time. Yet, spatial smearing and inhomogeneous signal-to-noise are challenging factors to source reconstruction from external sensor data. The detection of weak sources in the presence of stronger regional activity nearby is a typical complication of MEG/EEG source imaging. We propose a novel, hypothesis-driven source reconstruction approach to address these methodological challenges1. The imaging with embedded statistics (iES) method is a subspace scanning technique that constrains the mapping problem to the actual experimental design. A major benefit is that, regardless of signal strength, the contributions from all oscillatory sources, which activity is consistent with the tested hypothesis, are equalized in the statistical maps produced. We present extensive evaluations of iES on group MEG data, for mapping 1) induced oscillations using experimental contrasts, 2) ongoing narrow-band oscillations in the resting-state, 3) co-modulation of brain-wide oscillatory power with a seed region, and 4) co-modulation of oscillatory power with peripheral signals (pupil dilation). Along the way, we demonstrate several advantages of iES over standard source imaging approaches. These include the detection of oscillatory coupling without rejection of zero-phase coupling, and detection of ongoing oscillations in deeper brain regions, where signal-to-noise conditions are unfavorable. We also show that iES provides a separate evaluation of oscillatory synchronization and desynchronization in experimental contrasts, which has important statistical advantages. The flexibility of iES allows it to be adjusted to many experimental questions in systems neuroscience.\n\nAuthor summaryThe oscillatory activity of the brain produces a repertoire of signal dynamics that is rich and complex. Noninvasive recording techniques such as scalp magnetoencephalography and electroencephalography (MEG, EEG) are key methods to advance our comprehension of the role played by neural oscillations in brain functions and dysfunctions. Yet, there are methodological challenges in mapping these elusive components of brain activity that have remained unresolved. We introduce a new mapping technique, called imaging with embedded statistics (iES), which alleviates these difficulties. With iES, signal detection is constrained explicitly to the operational hypotheses of the study design. We show, in a variety of experimental contexts, how iES emphasizes the oscillatory components of brain activity, if any, that match the experimental hypotheses, even in deeper brain regions where signal strength is expected to be weak in MEG. Overall, the proposed method is a new imaging tool to respond to a wide range of neuroscience questions concerning the scaffolding of brain dynamics via anatomically-distributed neural oscillations.

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