Biology subjects

Baig, U.

Publications and source records attributed to Baig, U..

3 recordsLinked to original sources

bioRxiv2020

Diversity of culturable actinobacteria producing protease inhibitors from the intertidal zones of Maharashtra, India

Phylogenetic diversity of culturable actinobacteria isolated from the intertidal regions of west coast of Maharashtra, India was studied using 16S rRNA gene sequencing. Total of 140 actinobacterial isolates were obtained, which belonged to 14 genera, 10 families and 65 putative species with Streptomyces being the most dominant (63%) genus followed by Nocardiopsis and Micromonospora. They were screened for production of extracellular protease inhibitors (PI) against three pure proteases viz. chymotrypsin, trypsin, subtilisin and one crude extracellular protease from Pseudomonas aeruginosa. Eighty percent of the isolates showed PI activity against at least one of the four proteases, majority of them belonged to genus Streptomyes. Actinobacterial diversity from two sites Ade (17{degrees}52' N, 73{degrees}04' E) and Harnai (17{degrees}48' N, 73{degrees}05' E) with varying degree of anthropological pressure showed that more putative species diversity was obtained from site with lower human intervention i.e Ade (Shannons H 3.45) than from Harnai (Shannons H 2.83), a site with more human intervention. Further, in Ade percentage of isolates not showing PI activity against any of the proteases was close to 21% and that in Harnai was close to 9%. Considering human activities in the coastal region might be contributing to increasing the organic load and in turn increasing the presence of extracellular enzymes in the intertidal environments it would be interesting to look at the association of PI production and organic load in these habitats.

microbiology↗

bioRxiv2020

Phylogenetic diversity and activity screening of cultivable actinobacteria isolated from marine sponges and associated environments from the western coast of India

Phylogenetic diversity of cultivable actinobacteria isolated from sponges (Haliclona spp.) and associated environments of intertidal zones, along the northern parts of west coast of India, were studied using 16S rRNA gene sequences. A subset of actinobacteria were screened for three activities, namely predatory behavior, antibacterial activity and enzyme inhibition. We recovered 237 isolates of actinobacteria belonging to 19 families and 28 genera, which could be attributed to 95 putative species using maximum likelihood partition and 100 putative species using Bayesian partition in Poisson Tree Processes. Although the trends in the discovery of actinobacterial genera isolated from sponges was consistent with previous studies from different study areas, we provide first report of nine actinobacterial species from sponges. We observed widespread non-obligate epibiotic predatory behavior in eight actinobacterial genera and we provide first report of predatory activity in Brevibacterium, Glutamicibacter, Micromonospora, Nocardiopsis, Rhodococcus and Rothia. Sponge associated actinobacteria showed significantly more predatory behavior than environmental isolates. While antibacterial activity by actinobacterial isolates mainly affected Gram-positive target bacteria with little to no effect on Gram-negative bacteria, predation targeted both Gram-positive and Gram-negative prey with equal propensity. Actinobacterial isolates from both sponge and associated environment produced inhibitors of serine proteases and angiotensin converting enzyme. Predatory behavior was strongly associated with inhibition of trypsin and chymotrypsin. Our study suggests that sponge and associated environment of western coast of India are rich in actinobacterial diversity with widespread predatory activity, antibacterial activity and production of enzyme inhibitors. Understanding diversity and associations among various actinobacterial activities, with each other and the source of isolation, can provide new insights in marine microbial ecology and provide opportunities to isolate novel therapeutic agents.

microbiology↗

bioRxiv2018

Foraging theory and the propensity to be obese: an alternative to thrift

The evolutionary origin of obesity is classically believed to be genetic or developmentally induced thrift, as an adaptation to ancestral feast and famine conditions. However, recently the thrift family of hypotheses have attracted serious criticism necessitating alternative thinking. Optimization of foraging behaviour is an important aspect of behavioural evolution. For a species evolved for optimizing nutritional benefits against predation or other foraging risks, reduction in foraging risk below a threshold dramatically increases the steady-state body weight. In modern life where feeding is detached from foraging, the behavioural regulation mechanisms are likely to fail resulting into escalation of adiposity. At a proximate level the signalling pathways for foraging optimization involve fear induced signal molecules in the brain including Cocaine and Amphetamine Regulated Transcript (CART) interacting with adiposity signals such as leptin. While leptin promotes the expression of the fear peptides, the fear peptides promote anorectic action of leptin. This interaction promotes foraging drive and risk tolerance when the stored energy is low and suppresses hunger and foraging drive when the perceived risk is high. The ecological model of foraging optimization and the molecular model of interaction of these peptides converge in the outcome that the steady state adiposity is an inverse square root function of foraging risk. The foraging optimization model is independent of thrift or insurance hypotheses, but not mutually exclusive. We review existing evidence and suggest testable predictions of the model. Understanding obesity simultaneously at proximate and ultimate levels is likely to suggest effective means to curb the obesity epidemic.

evolutionary biology↗