Biology subjects

Bagheri, Z.

Publications and source records attributed to Bagheri, Z..

3 recordsLinked to original sources

bioRxiv2024

Combining Unity with machine vision to create low latency, flexible, and simple virtual realities

O_LIIn recent years, virtual reality arenas have become increasingly popular for quantifying visual behaviors. By using the actions of a constrained animal to control the visual scenery, the animal is provided the perception of moving through a simulated environment. As the animal is constrained in space, this allows detailed behavioral quantification. Additionally, as the world is generally computer-generated this allows for mechanistic quantification of visual triggers of behavior. C_LIO_LIWe created a novel virtual arena combining machine vision with the gaming engine Unity. For tethered flight, we enhanced an existing multi-modal virtual reality arena, MultiMoVR (Kaushik et al., 2020) but tracked hoverfly wing movements using DeepLabCut-live (DLC-live, Kane et al., 2020). For trackball experiments, we recorded the motion of a ball that a tethered crab was walking on using FicTrac (Moore et al., 2014). In both cases, real-time tracking was interfaced with Unity to control the movement of the tethered animals avatars in the virtual world. We developed a user-friendly Unity Editor interface, CAVE, to simplify experimental design and data storage without the need for coding. C_LIO_LIWe show that both the DLC-live-Unity and the FicTrac-Unity configurations close the feedback loop effectively with small delays, less than 50 ms. Our FicTrac-Unity integration highlighted the importance of closed-loop feedback by reducing behavioral artifacts exhibited by the crabs in open-loop scenarios. We show that Eristalis tenax hoverflies, using the DLC-live-Unity integration, navigate towards flowers. The effectiveness of our CAVE interface is shown by implementing experimental sequencing control based on avatar proximity to virtual structures. C_LIO_LIOur results show that combining Unity with machine vision tools such as DLC-live and FicTrac provides an easy and flexible virtual reality (VR) environment that can be readily adjusted to new experiments and species. This can be implemented programmatically in Unity, or by using our new tool CAVE, which allows users to design and implement new experiments without programming in code. We provide resources for replicating experiments and our interface CAVE via GitHub, together with user manuals and instruction videos, for sharing with the wider scientific community. C_LI

animal behavior and cognition↗

bioRxiv2019

Wolbachia promote successful sex with siblings

Wolbachia are intracellular -proteobacteria that have a wide distribution among various arthropods and nematodes. They affect the host reproduction favoring their maternal transmission, which sets up a potential conflict in inbreeding situations when the host avoids sexual reproduction preventing inbreeding depression, while Wolbachia pushes it. In this study, we used the wasp Habrobracon hebetor to test the hypothesis that Wolbachia modulate inbreeding avoidance behaviour and promote sib mating. To test this, we first cured wasps of Wolbachia using tetracycline treatment and produced infected and uninfected isolines. Then, we paired the uninfected and infected females with sibling (inbred) and non-sibling (outbred) males in choice and non-choice experiments. Our results showed no obvious precopulatory inbreeding avoidance in this wasp as brother-sister mating rates (in both choice and nonchoice experiments) were not significantly different form non-sibling pairs, regardless of Wolbachia infection. However, our results indicated that H. hebetor shows a strong postcopulatory inbreeding avoidance behaviour that results in a low fertilization rate of uninfected siblings and therefore high rate of production of male progeny was obtained. We observed higher rates of fertilization success in the Wolbachia-infected lines that resulted in significantly higher female progeny production compared to the uninfected sib mates. Since diploid females are the result of successful fertilization due to haplodiploidy sex determination system in this insect, our results indicate that Wolbachia promoted fertile sib mating in H. hebetor. Interestingly, the rate of adult emergence in the progeny of Wolbachia-infected sib mates were almost similar to the non-sib mate crosses and significantly more than those observed in the uninfected sib mate crosses. We support the idea that Wolbachia modulate inbreeding avoidance and promote sib mating and also mitigate inbreeding depression. The wasp Habrobracon hebetor siblings infected with Wolbachia show higher rates of fertilization success and higher adult emergence rates compared to the uninfected sib mates. By promoting successful sex with siblings and increasing the probability of female progeny, Wolbachia enhance their transmission to the next generation and also mitigate inbreeding depression. This is an undescribed effect of Wolbachia (symbiont) on the host reproduction.

evolutionary biology↗

bioRxiv2018

Wolbachia induce cytoplasmic incompatibility and affect mate preference in Habrobracon hebetor to increase the chance of its transmission to the next generation

Wolbachia are common intracellular bacteria that are generally found in arthropods including a high proportion of insects and also some nematodes. This intracellular symbiont can affect sex ratio with a variety of reproductive anomalies in the host, including cytoplasmic incompatibility (CI) in haplodiploides. In this study, we questioned if the parasitoid wasp, Habrobracon hebetor (Hym.: Braconidae), which is one of the most important biological control agents of many lepidopteran larvae, is infected with Wolbachia. To test this, DNA was extracted from adult insects and subjected to PCR using specific primers to Wolbachia target genes. The results showed high rate of Wolbachia infection in this parasitoid wasp. To find out the biological function of Wolbachia in H. hebetor, we removed this bacterium from the wasps using antibiotic treatment (cured wasps). Results of the crossing experiments revealed that Wolbachiainduced CI in H. hebetor in which cured females crossed with infected males produced only males, while in the progeny of other crosses, both males and females were observed. Also, our result showed that the presence of Wolbachia in the females increased fecundity and female offspring of this parasitoid wasp. However, the presence of Wolbachia in the males had no significant effect on the fecundity and female production, but might have incurred costs. We also investigated the effect of Wolbachia on mate choice and found that Wolbachia affects mating behavior of H. hebetor. Together, we show that Wolbachia induce CI in H. hebetor and affect host mating behavior in favor of its transmission. Wolbachia utilize these strategies to increase the frequency of infected females in the host population.

zoology↗