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Badaoui, B.

Publications and source records attributed to Badaoui, B..

2 recordsLinked to original sources

The black goby Gobius niger Linnaeus, 1758 in the Marchica lagoon (Alboran Sea, Morocco): Ecological traits and site-related footprint

Fishes belonging to Gobiidae are well represented in the Marchica lagoon on the Moroccan Mediterranean coast, both in terms of species richness and abundance, with the black goby, Gobius niger Linnaeus, 1758, being the dominant species. The present study aims to examine (1) the spatial and temporal distribution of Gobius niger and its environmental drivers in the lagoon and (2) the potential lagoon-related footprint using morphometric, genetic and parasitological proxies. Systematic monthly sampling covering the whole lagoon basin performed between October 2015 and September 2016 revealed year-long presence of G. niger throughout the lagoon with significantly low densities in winter. The higher abundances were recorded in the shallow bottoms of the lagoon inner margins on a variety of substrates (mud, muddy-sand, sandy-mud and fine sand) mostly covered by macroalgae and/or seagrass meadows. Depth, that has to be seen as a variable that acts in concert with other factors such as temperature, vegetation cover and sediment as the Mean Grain Size, seems to be the most important predictor, explaining the distribution of G. niger in the lagoon, with a trend of increasing abundance towards shallower stations. Comparison of black goby populations from the Marchica lagoon with their counterparts from the adjacent Mediterranean coast of Morocco revealed that specimens caught at sea are of a bigger size compared to the lagoon population. Of the 180 gobies investigated, not a single one hosted the parasites we targeted in the parasitological approach, monogenean flatworms. The absence of population structuring, low genetic diversity and presence of common haplotypes indicate no apparent restriction in the gene flow between the two populations. Therefore, the observed morphometric differences seem to be due to the external environmental conditions rather than genetic differences. Gobius niger plays a key eco-trophic role by providing a link between benthic invertebrates and large predators. The shallow beds of the lagoon, where the species is abundant, are key habitats in the Marchica lagoon and need to be considered in all management plans aiming at the conservation of biodiversity and ecological processes.

ecology↗

Genetic Diversity and Genomic Epidemiology of SARS-COV-2 in Morocco

COVID-A9 is an infection disease caused by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), declared as a pandemic due to its rapid expansion worldwide. In this study we investigate the genetic diversity and genomic epidemiology of SARS-CoV-2 using 22 virus genome sequences reported by three different laboratories in Morocco till the date 07/06/2020 as well as (40366) virus genomes from all around the world. The SARS-CoV-2 genomes from Moroccan patients revealed 62 mutations of which 30 were missense mutations. The mutations Spike_D614G and NSP12_P323L were present in all the 22 analyzed sequences, followed by N_G204R and N_R203K which occurred in 9 among the 22 sequences. The mutations NSP10_R134S, NSP15_D335N, NSP16_I169L, NSP3_L431H, NSP3_P1292L and Spike_V6F occurred one time in our sequences with no record in other sequence worldwide. These mutations should be investigated to figure out their potential effects on all around the world virulence. Phylogenetic analyses revealed that Moroccan SARS-CoV-2 genomes included 9 viruses pertaining to clade 20A, 9 to clade 20B and 2 to clade 20C. This finding suggest that the epidemic spread in Morocco did not show a predominant SARS-CoV-2 route. For multiple and unrelated introductions of SARS-CoV-2 into Morocco via different routes have occurred, giving rise to the diversity of virus genomes in the country. Furthermore, very likely, the SARS-CoV-2 virus circulated in cryptic way in Morocco starting from the fifteen January before the discovering of the first case the second of March.

genomics↗