Biology subjects

Bach, D. R.

Publications and source records attributed to Bach, D. R..

6 recordsLinked to original sources

bioRxiv2026

Eye-Tracking-BIDS: the Brain Imaging Data Structure extended to gaze position and pupil data

The Brain Imaging Data Structure (BIDS) is a widely adopted, community-driven standard to organize neuroimaging data and metadata. Although numerous extensions have been developed to incrementally extend coverage to new modalities and data types, an unambiguous, granular specification for eye-tracking recordings is lacking. Here, we present how BIDS will structure data and metadata produced by eye-tracking devices, including gaze position and pupil data. In addition to prescribing the organization of the unprocessed (raw) recordings and associated metadata as produced by the device, BEP20 also resolves gaps in current BIDS specifications beyond the scope of eye tracking. In particular, it adds a mechanism for including asynchronous model parameters and messages, such as contextual information, statuses, and events, such as triggers, generated by the device. BEP20 includes examples that illustrate its applicability in various experimental settings. This BIDS extension provides a robust standard that supports the development of self-adaptive, open, and automated eye-tracking data structures, thereby bolstering transparency and reliability of results in this field.

neuroscience↗

bioRxiv2026

An integrated virtual reality platform for naturalistic neuroimaging with magnetoencephalography

Studying the brain in motion promises deep insights into the neural circuits that support complex, real-world behaviour. In humans, wearable optically pumped magnetometers (OPMs) enable magnetoencephalography (MEG) with millisecond temporal resolution and millimetre spatial precision during movement. Integrating this technology with virtual reality (VR) could enable fully naturalistic experimental paradigms, but magnetic interference from existing head-mounted displays (HMDs) prevents reliable whole-brain MEG recordings. Here, we present and validate a VR system that integrates with wearable, OPM-based MEG. At its core is a purpose-designed HMD with minimal ferromagnetic material, resulting in magnetic flux density two orders of magnitude lower than consumer-grade alternatives at comparable resolution and weight. Using phantom measurements and established perceptual and cognitive benchmark tasks across participants, we demonstrate robust stimulus-induced neuronal activity at both sensor and source level. Crucially, these sources span the entire brain, including visual, motor and prefrontal cortices, as well as hippocampus. Our proposed VR system is straightforward to produce, readily extendable, and enables whole-brain MEG during immersive, naturalistic behaviours.

neuroscience↗

bioRxiv2025

Human escape follows a structured movement pattern shaped by threat and context

Evading danger is critical to survival. In non-human animals, escape strategies are shaped by neural, biomechanical, and ecological constraints, resulting in species-specific patterns. In humans, ethical and practical constraints have until recently hindered investigation of escape movements, such that its organising principles are commonly extrapolated from other, mostly quadruped, species. Here, we use freely moving virtual reality (fm-VR) in a large physical space to present biologically relevant threats. We discover that human escape behaviour is organized within a constrained action space shaped by threat and context, revealing a small set of stereotyped kinematic patterns that are not predicted from those reported in other mammals. Pattern selection is shaped by environment and individual preference, and is not predicted by behaviour in safe conditions. The dominant kinematic pattern includes head orientation toward the threat, body rotation beyond this angle until facing away, and escape initiation with ipsilateral foot. Alternative variants include turning away from the threat, backward movement, and misdirected flight. Certain alternative escape patterns and kinematic features reduce success, whereas specific preparatory adjustments enhance it. Our results provide a foundation for probing the neural mechanisms of human escape, and enable investigation of potential disruptions in clinical conditions.

animal behavior and cognition↗

bioRxiv2025

Predicting individual differences of fear and cognitive learning and extinction

The abilities to acquire new information and to modify previously learned knowledge are critical in an ever-changing world. However, the efficacy of learning is notably variable among individuals, with extinction learning being the epitome of such variability. Abundant studies have identified a core network of brain regions including amygdala, hippocampus, dorsal anterior cingulate cortex (ACC), ventromedial prefrontal cortex (PFC) and, more recently, the cerebellum, as key players in learning and extinction. Yet, the precise interactions within this network and their relationship to individual learning abilities and extinction have remained largely unexplored. In the present study, we examined how functional (FC), effective (EC), and structural (SC) connectivity patterns in the core learning network allow predicting individual differences in the efficacy of learning, extinction, and renewal. Analysing a large dataset of over 500 participants across a multitude of paradigms, our results revealed that FC predicted better acquisition, with a central role of ACC and hippocampus, whereas SC, involving ACC and amygdala, predicted higher levels of extinction learning. EC results suggested a predominantly inhibitory coupling among core learning network nodes, with paradigm-specific EC connectivity patterns predicting learning. Our predictions not only generalised between fear and cognitive predictive learning paradigms but were also successful in predicting learning from task-related FC and simulated data. Together, these results describe the multimodal neural determinants of learning, extinction, and renewal, and may inform individualised interventions for affective disorders based on neural connectivity patterns.

neuroscience↗

bioRxiv2021

Transcranial theta-burst stimulation of primary sensory cortex attenuates somatosensory threat memory in humans

Sensory cortices are required for learning to discriminate complex stimuli that predict threat from those that predict safety in rodents. Yet, sensory cortices may not be needed to learn threat associations to simple stimuli. It is unknown whether these findings apply in humans. Here, we investigated the role of primary sensory cortex in discriminative threat conditioning with simple and complex somatosensory conditioned stimuli (CS) in healthy humans. Immediately before conditioning, participants received continuous theta-burst transcranial magnetic stimulation (cTBS) to primary somatosensory cortex either in the CS-contralateral or CS-ipsilateral hemisphere. After overnight consolidation, threat memory was attenuated in the contralateral compared to the ipsilateral group, as indicated by reduced startle eye-blink potentiation. There was no evidence for a difference between simple and complex stimuli, or that CS identification or conditioning was affected, suggesting a stronger effect of cTBS on consolidation than on initial stimulus processing. We propose that non-invasive stimulation of sensory cortex may provide a new avenue for interfering with threat memories in humans.

neuroscience↗

bioRxiv2018

Affective flexibility without perceptual awareness

In an ever-changing environment, survival depends on learning which stimuli represent threat, and also on updating such associations when circumstances shift. Humans can acquire physiological responses to threat-associated stimuli even when they are unaware of them, but the role of awareness in updating threat contingencies remains unknown. This complex process - generating novel responses while simultaneously suppressing learned ones - relies on distinct neural mechanisms from initial learning, and has only been shown with awareness. Can it occur unconsciously? Here we show that it can. Participants underwent classical threat conditioning to visual stimuli that were suppressed from their awareness. One of two images was paired with an electric shock; halfway through the experiment, contingencies were reversed and the shock was paired with the other image. We found that physiological responses reflected changes in stimulus-threat pairings independently of stimulus awareness, demonstrating the sophistication of unconscious affective flexibility.

neuroscience↗