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Awan, F.

Publications and source records attributed to Awan, F..

5 recordsLinked to original sources

Transforming dairy waste into hydrogen fuel using alginate-encapsulated bacterial co-cultures

Dairy waste, such as whey resulting from cheese production, is produced in massive volumes worldwide and is regarded as environmentally difficult to dispose of due to its high organic content1. Harnessing the potential of this waste material to support the synthesis of valuable products such as hydrogen fuel or reduced graphene oxide, which may be utilized for conductive thin films and energy storage2,3, can reduce waste and add revenue streams for dairy farmers. Here, we demonstrate a circular bioeconomy using alginate-encapsulated co-cultures of Shewanella oneidensis together with lactic-acid-producing bacteria Klebsiella pneumoniae. These co-cultures can directly metabolize unprocessed cheese-making waste as an electron source instead of costly, environmentally high-impact lactic acid4,5. Alginate-encapsulated co-cultures fed unprocessed dairy waste showed a 2-to-3-fold higher graphene oxide reduction rate compared to S. oneidensis monocultures with no supplemental electron source. Encapsulated co-cultures were able to be recycled for more than 30 days with no measurable decrease in graphene oxide reduction efficiency, showing compatibility with future industrial scaling. Photocatalytic hydrogen generation with cadmium selenide quantum dots as the catalyst resulted in 6-fold increases in hydrogen produced by co-cultures using milk as an electron source precursor for the system in comparison to S. oneidensis monocultures without any added electron sources. Thus, dairy waste may be processed to drive the synthesis of valuable products utilizing microbial electron transfer processes, converting a significant fluvial environmental pollutant into a valuable renewable energy resource that could provide a robust alternative revenue stream for dairy farmers in a volatile industry.

microbiology↗

HEMATO-CHEMICAL VARIATIONS- A DIAGNOSTIC TOOL FOR BABESIA, THEILERIA AND ANAPLASMA INFECTIONS IN CAPTIVE HOG DEER (AXIS PORCINUS)

Hog deer are an essential component of Pakistans biodiversity. Their conservation helps maintain integrity of local ecosystems, contributing to overall stability and balance of regions wildlife populations. In Pakistan, they are classified as an endangered species according to IUCN. Theileria, babesia and anaplasma are among most prevalent blood parasites in ruminants which require diagnosis at early stages of the infection so that treatment protocols can be followed and more severe pathological alterations can be prevented. The changes in hemato-chemical parameters caused by Theileria, babesia and anaplasma were recorded individually and then compared with healthy group of hog deer respectively. Alterations in hemato-chemical parameters produced by these parasite-infected hog deer were assessed as potential diagnostic tools for distinguishing between individual blood parasites. Total leukocyte count, monocytes and eosinophils were observed to be higher than normal in babesia infected hog deer while level was lower than normal hog deer in anaplasma and theileria infected hog deer. The main objective of this study is to promote early diagnosis of parasitic infections in hog deer to facilitate prompt treatment, pathological prevention and allocate resources for further research on hemato-chemical parameters as diagnostic tools, enhancing understanding and management of blood parasite infections in hog deer.

pathology↗

The impact of mutations on the structural and functional properties of SARS-CoV-2 proteins: A comprehensive bioinformatics analysis

An in-depth analysis of first wave SARS-CoV-2 genome is required to identify various mutations that significantly affect viral fitness. In the present study, we have performed comprehensive in-silico mutational analysis of 3C-like protease (3CLpro), RNA dependent RNA polymerase (RdRp), and spike (S) proteins with the aim of gaining important insights into first wave virus mutations and their functional and structural impact on SARS-CoV-2 proteins. Our integrated analysis gathered 3465 SARS-CoV-2 sequences and identified 92 mutations in S, 37 in RdRp, and 11 in 3CLpro regions. The impact of those mutations was also investigated using various in silico approaches. Among these 32 mutations in S, 15 in RdRp, and 3 in 3CLpro proteins are found to be deleterious in nature and could alter the structural and functional behavior of the encoded proteins. D614G mutation in spike and P323L in RdRp are the globally dominant variants with a high frequency. Most of them have also been found in the binding moiety of the viral proteins which determine their critical involvement in the host-pathogen interactions and drug targets. The findings of the current study may facilitate better understanding of COVID-19 diagnostics, vaccines, and therapeutics.

bioinformatics↗

Molecular epidemiology and clone transmission of carbapenem-resistant Acinetobacter baumannii in ICU rooms

Carbapenem-resistant Acinetobacter baumannii (CRAB) is a major cause of nosocomial infections and hospital outbreaks worldwide, remaining a critical clinical concern. Here we characterized and investigated the phylogenetic relationships of 105 CRAB isolates on intensive care unit surfaces from one hospital in China collected over six years. All strains carried blaOXA-23, blaOXA-66 genes for carbapenem resistance, also had high resistance gene, virulence factor and insertion sequences burdens. Whole-genome sequencing revealed all strains belonged to ST2, the global clone CC2. The phylogenetic analysis based on the core genome showed all isolates was dominated by a single lineage of three clusters and eight different clones. Two clones were popular during the collection time. Using chi-square test to identify the epidemiologically meaningful groupings, we found the significant difference in community structure only present in strains from separation time. The haplotype and median-joining network analysis revealed genetic differences among clusters and changes occurred overtime in the dominating cluster. Our results highlighted substantial multidrug-resistant CRAB burden in hospital ICU environment, demonstrated potential clone outbreak in hospital.

bioinformatics↗

Prevalence and global distribution of blaKPC-2 and blaNDM-1 genes in Klebsiella Pneumoniae

Carbapene-resistant Klebsiella pneumoniae infections have caused a major concern and posed a global health threat to public. blaKPC-2 and blaNDM-1 genes are the most widely reported of carbapenem resistance genes in K. pneumoniae. In this study, we investigated phylogenetic relationships of carbapene-resistant K. pneumoniae from a tertiary hospital between 2013 and 2018 in China and analyzed the global epidemiology and distribution of blaKPC-2 and blaNDM-1 gene in K. pneumoniae based on 1579 NGS genomes. We found that 19 carbapene-resistant K. pneumoniae isolated were divided into five lineages and all had high genotypic and phenotypic resistance. Two lineages (mostly ST11 and ST25) were the major type detected carrying blaKPC-2 and blaNDM-1 gene, respectively. Among global genomes data, 147 known ST types have been identified and ST11 and ST258 were the globally prevalent clones. Genetic environment analysis showed that the ISKpn27-blaKPC-2-ISKpn6 and blaNDM-1-ble-trpf-nagA may be the core structure in the horizontal transfer of blaKPC-2 and blaNDM-1, respectively. In addition, DNA transferase (hin) may be involved in the horizontal transfer or the expression of blaNDM-1. This study sheds some light on the genetic environment of blaKPC-2 and blaNDM-1 and should foster further studies about the mechanism of carbapene-resistant K. pneumoniae dissemination.

bioinformatics↗