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Atsumi, K.

Publications and source records attributed to Atsumi, K..

4 recordsLinked to original sources

Crowdsourced Wildlife Observations Uncover Ecotourism Assets-Sites and Species

Ecotourism plays a vital role in conserving ecosystems and revitalising rural economies. Sustainable management requires strategies that effectively balance conservation needs with tourism promotion, necessitating a clear understanding of which landscapes and species attract visitors. However, identifying these "charismatic" assets has traditionally relied on costly and spatially limited surveys. This study leverages crowdsourced biodiversity data from digital platforms (iNaturalist and Biome) to identify nature-based recreation sites and visitor-preferred species in Inabe City, a rural Japanese municipality with high recreational visitation. We analysed 12,764 observations within the city and 238,625 reference observations from across Japan. By applying the Out-of-Area Activity Index (OAAI) to biological recording data, we distinguished visitors from residents with high accuracy. Spatial analyses using hurdle models revealed distinct preferences: while both groups frequented recreational facilities, residents concentrated on lowland forests, whereas visitors were significantly drawn to wetlands and mountain habitats. To quantify specific biological interests, we developed the Visitor Preference Index (VPI). This index highlighted that visitors disproportionately recorded aquatic insects (e.g., dragonflies) and endangered understory plants compared to their observations elsewhere, identifying these taxa as key ecological assets. These findings underscore the critical importance of managing highland forests and wetlands--habitats often vulnerable to degradation--to support both biodiversity and tourism. This study illustrates how crowdsourced biodiversity data can contribute to understanding human-nature interactions and offer a scalable tool for regional planning that integrates ecological conservation with sustainable tourism development.

ecology↗

Harnessing Community Science and Open Research-based Data to Track Distributions of Invasive Species in Japan

At the forefront of invasive alien species (IAS) control, information gaps about the latest IAS distribution can hinder the required actions of local governments. In Japan, many prefectural governments still lack a list of invasive species despite the request stipulated in the Invasive Alien Species Management Action Plan enacted in 2015. Here, we examined to what extent open research-based data deposited by museums and herbaria (ORD) and community science data deposited by volunteers (CSD) can fill the gaps. We focused on 145 plant and 38 insect invasive species, and updated their distribution maps using ORD and CSD. We found complementarity as well as common limitations between ORD and CSD. While taxonomic biases were weaker in ORD, CSD had better prefectural coverage. In addition, some important taxa have rarely been captured by CSD or ORD. Mixed strategies of facilitating community science, supporting local museums, and taxon-specific monitoring by experts are necessary.

ecology↗

Boosting biodiversity monitoring using smartphone-driven, rapidly accumulating citizen data

Comprehensive biodiversity data is crucial for ecosystem protection. The Biome mobile app, launched in Japan, efficiently gathers species observations from the public using species identification algorithms and gamification elements. The app has amassed >6M observations since 2019. Nonetheless, community-sourced data may exhibit spatial and taxonomic biases. Species distribution models (SDMs) estimate species distribution while accommodating such bias. Here, we investigated the quality of Biome data and its impact on SDM performance. Species identification accuracy exceeds 95% for birds, reptiles, mammals, and amphibians, but seed plants, mollusks, and fishes scored below 90%. Our SDMs for 132 terrestrial plants and animals across Japan revealed that incorporating Biome data into traditional survey data improved accuracy. For endangered species, traditional survey data required >2,000 records for accurate models (Boyce index [≥] 0.9), while blending the two data sources reduced this to around 300. The uniform coverage of urban-natural gradients by Biome data, compared to traditional data biased towards natural areas, may explain this improvement. Combining multiple data sources better estimates species distributions, aiding in protected area designation and ecosystem service assessment. Establishing a platform for accumulating community-sourced distribution data will contribute to conserving and monitoring natural ecosystems.

ecology↗

Repeated translocation of a supergene underlying rapid sex chromosome turnover in Takifugu fish

Recent studies have revealed a surprising diversity of sex chromosomes in vertebrates. However, the detailed mechanism of their turnover is still elusive. To understand this process, it is necessary to compare closely related species in terms of sex-determining genes and the chromosomes harboring them. Here, we explored the genus Takifugu, in which one strong candidate sex-determining gene, Amhr2, has been identified. To trace the processes involved in transitions in the sex determination system in this genus, we studied 12 species and found that while the Amhr2 locus likely determines sex in the majority of Takifugu species, three species have acquired sex-determining loci at different chromosomal locations. Nevertheless, the generation of genome assemblies for the three species revealed that they share a portion of the male-specific supergene that contains a candidate sex-determining gene, GsdfY, along with genes that potentially play a role in male fitness. The shared supergene span approximately 100 kb and are flanked by two duplicated regions characterized by CACTA transposable elements. These results suggest that the shared supergene has taken over the role of sex-determining locus from Amhr2 in lineages leading to the three species, and repeated translocations of the supergene underlie the turnover of sex chromosomes in these lineages. These findings highlight the underestimated role of a mobile supergene in the turnover of sex chromosomes in vertebrates. SignificanceAlthough turnover of sex chromosomes is very common in many vertebrate lineages, the transition process is still elusive. We studied the sex-determining region (SDR) of 12 congeneric fish species. We found that while nine species retained their ancestral SDR, three species had acquired derived SDRs. Although the derived SDRs resided in three different chromosomes, they harbored a shared supergene flanked by two putative transposable elements. The results highlight the underestimated role of a mobile supergene in turnover of sex chromosomes in vertebrates.

genomics↗