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Ashish, F.

Publications and source records attributed to Ashish, F..

5 recordsLinked to original sources

Spatio-temporal regulation of ligand trafficking and TLR9 activation involves PIEZO1 mechanosensing in human plasmacytoid dendritic cells

Plasmacytoid dendritic cells (pDCs) are specialized innate immune cells which play a pivotal role in antiviral immunity by producing large quantities of type I interferons (IFNs) upon sensing nucleic acids via Toll-like receptor 9 (TLR9). Synthetic oligodeoxynucleotides (ODNs) such as CpGA and CpGB, both containing unmethylated CpG motifs, are commonly used experimental TLR9 agonists. Interestingly, CpGA and CpGB elicit markedly different responses in pDCs - CpGA induces robust IFN- production, whereas CpGB does not. The mechanistic basis underlying this ligand-specific functional divergence has remained unclear. Here, we identify PIEZO1, a mechanosensory ion channel, as a critical determinant of ligand-specific IFN responses in human primary pDCs. We demonstrate that unlike CpGB, CpGA self-associates into larger aggregates that generate membrane tension during cellular uptake, leading to activation of PIEZO1. This activation triggers localized calcium influx and cytoskeletal remodeling, resulting in the formation of local F-actin structures that retain CpGA within early endosomes enabling sustained IRF7 nuclear translocation and robust type I IFN production. Disruption of PIEZO1 or actin polymerization abrogates CpGA-induced IFN production, while pharmacological activation of Piezo1 enhances IFN production in response to CpGB. Thus, these findings uncover a previously unrecognized biophysical checkpoint in nucleic acid sensing, wherein membrane tension is transduced via PIEZO1 into spatially controlled TLR9 signaling. Overall, our study establishes PIEZO1 mechanosensing at the plasma membrane as a key regulatory event in nucleic acid-induced immunity, with different functional outcomes based on the cargo structure, opening potential new avenues for modulating type I IFN responses in infection and autoimmunity.

immunology↗

SMALL MOLECULES WHICH CAN KEEP THE ECTODOMAINS OF HUMAN FcγRIIIa CLOSED: THERAPY FOR AUTOIMMUNE THROMBOCYTOPENIA PURPURA?

Comparative analysis of crystal structures of the ectodomains of the unliganded Fc{gamma} receptor A (Fc{gamma}RIIIa), its complex to IgG Fc and two designer proteins named "affimers" revealed that if the two ectodomains of Fc{gamma}RIIIa remain "closed", then they are conformationally incompetent to bind Fc region of antigen or infected cell bound IgG and protect them from degradation in the endosomes. By tightly binding to its ectodomains, these affimers derailed binding of Fc{gamma}RIIIa to Fc portion of IgG leading to latters degradation. This ability to decrease antibody titer suggests use of these affimers as therapeutic interventions in autoimmune conditions like immune thrombocytopenia purpura (ITP) which is caused by autoantibodies against platelets. I queried: are there any small molecules which can dock and lock the ectodomains of Fc{gamma}RIIIa analogous to affimers? Applying MTiOpenScreen on few libraries, I shortlisted 30 drug-like molecules which preferentially docked in the cleft between ectodomains of human Fc{gamma}RIIIa. Their complexes were subsequently analyzed by MD simulations at theoretical pH 7.4 (and 5.7) at 310 K. For all trajectories, we tracked two characteristic molecular descriptors of Fc{gamma}RIIIa: {theta} and {delta}, the angle and distance between the center masses of the two ectodomains, respectively. The values of these descriptors, in conjunction with estimated binding energies from MD simulations allow me to report three new compounds which may act as and/or lead to small molecule interventions in autoimmune conditions like ITP. Graphical abstract O_FIG O_LINKSMALLFIG WIDTH=200 HEIGHT=97 SRC="FIGDIR/small/652134v1_ufig1.gif" ALT="Figure 1"> View larger version (22K): org.highwire.dtl.DTLVardef@1ca47d3org.highwire.dtl.DTLVardef@131a4eeorg.highwire.dtl.DTLVardef@431c70org.highwire.dtl.DTLVardef@87b_HPS_FORMAT_FIGEXP M_FIG C_FIG

biophysics↗

VISUALIZING THE NUCLEATING AND CAPPED STATES OF F-ACTIN BY Ca2+-GELSOLIN: SAXS DATA BASED STRUCTURES OF BINARY AND TERNARY COMPLEXES

Structural insight eludes on how full-length gelsolin depolymerizes and caps F-actin, while the same entity can nucleate polymerization of G-actins. Employing small angle X-ray scattering (SAXS) data analysis, we deciphered these two contrasting assemblies. Mixing Ca2+-gelsolin with F-actin in high salt F-buffer resulted in depolymerization of ordered F-actin rods to smaller sized species which became monodisperse upon dialysis with low salt G-buffer. These entities were the ternary (GA2) and binary (GA) complexes of gelsolin and actin with radius of gyration and maximum linear dimension of 4.55 and 4.68 nm, and 15 and 16 nm, respectively. In contrast, upon mixing G-actin with Ca2+-gelsolin in G-buffer, rapid association of higher order species started. Using size exclusion chromatography in-line with SAXS, we confirmed that initially GA and GA2 species are formed as seen upon depolymerization of F-actin, followed by dialysis. Interestingly, while GA2 could seed formation of native-like F-actin in both G- and F-buffer, GA failed in G-buffer. Thus, GA2 and GA are the central species formed via depolymerization or towards nucleation. SAXS profile referenced modeling revealed that: 1) in GA, actin is bound to the C-terminal half of gelsolin, and 2) in GA2, second actin binds to the open N-terminal half accompanied by dramatic rearrangements across gelsolins g1-g2 and g3-g4 linkers. Importantly, first structural insight is provided into the two probable models for GA2 with two actins in parallel, but differentially stacked: one in polymerization competent, and other in incompetent manner, suggesting latter to represent capped state along with the inert GA. TOC Abstract O_FIG O_LINKSMALLFIG WIDTH=200 HEIGHT=129 SRC="FIGDIR/small/584204v1_ufig1.gif" ALT="Figure 1"> View larger version (45K): org.highwire.dtl.DTLVardef@9b7ab4org.highwire.dtl.DTLVardef@194d85aorg.highwire.dtl.DTLVardef@108151dorg.highwire.dtl.DTLVardef@1a24e88_HPS_FORMAT_FIGEXP M_FIG C_FIG HighlightsO_LIOrderly decrement in the length of F-actin by Ca2+-gelsolin was tracked by SAXS. C_LIO_LIResidual re-association in 1:2 ratio in F-buffer was quenched by dialysis in G-buffer. C_LIO_LIIdentical GA and GA2 entities formed upon mixing F- or G-actin with Ca2+-gelsolin. C_LIO_LIModels of nucleation competent, GA2 showed differential stacking of two G-actins. C_LIO_LIN-terminal half of gelsolin reposition as GA2 changes to or from GA, the capped state. C_LI

biophysics↗

SAXS DATA BASED GLYCOSYLATED MODELS OF HUMAN ALPHA-1-ACID GLYCORPROTEIN, A KEY PLAYER IN HEALTH, DISEASE AND DRUG CIRCULATION

Plasma Alpha-1-glycoprotein (AGP) binds diverse drugs, its isoforms and their levels vary significantly in acute phases of health. Relative binding of drugs to AGP and albumin has been used to model their release profiles, structural insights on glycosylated form of AGP will certainly improve estimations. Main challenges are: 1)heavy glycosylation of AGP (~50% of its mass), 2) isoforms of primary structure co-exist, and 3) extreme heterogeneity in the glycan motifs have been reported. Our small angle X-ray scattering (SAXS) data on plasma extracted AGP showed interparticulate effect from 283-313 K which disappeared irreversibly upon further heating to 343K. Using ALPHAFOLD2 server, the protein only portion could be modelled but its theoretical SAXS profile did not match acquired experimental data. Using mass spectra-based information, we attached glycan motifs at different known sites to compute four models of fully glycosylated AGP. Importantly, calculated SAXS profiles of our glycosylated models agreed well with the experimental data. Docking runs revealed that in silico interaction of different drugs when varied using unglycosylated vs. glycosylated model as receptor. Finally, we propose that our SAXS based models of glycoprotein are better representation of the molecule and should be considered for structure-based analysis and/or estimations.

biophysics↗

Plasmodium falciparum Kelch13 and its artemisinin-resistant mutants assemble as hexamers in solution: a SAXS data driven shape restoration study.

Artemisinin-resistant mutations in PfKelch13 identified worldwide are mostly confined to its BTB/POZ and KRP domains. To date, only two crystal structures of the BTB/POZ-KRP domains as tight dimers are available, which limits structure-based interpretations of its functionality. Our solution Small-Angle X-ray Scattering (SAXS) data driven shape restoration of larger length of protein brought forth that: i) PfKelch13 forms a stable hexamer in P6 symmetry, ii) interactions of the N-termini drive the hexameric assembly, and iii) the six KRP domains project independently in space, forming a cauldron-like architecture. While artemisinin-sensitive mutant A578S packed like the wild-type, hexameric assemblies of dominant artemisinin-resistant mutant proteins R539T and C580Y displayed detectable differences in spatial positioning of their BTB/POZ-KRP domains. Lastly, mapping of mutations known to enable artemisinin resistance explained that most mutations exist mainly in these domains because they are non-detrimental to assembly of mutant PfKelch13 and yet can alter the flux of downstream events essential for susceptibility to artemisinin.

biochemistry↗