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Aronson, H. S.

Publications and source records attributed to Aronson, H. S..

6 recordsLinked to original sources

Hypophosphite is a naturally-occurring selective inhibitor of syntrophic methanogenesis

Microbial methanogenesis is a major contributor to global warming and methane fluxes represent a loss of energy and electrons from industrial ecosystems. The chemical space of methane control strategies is still under-explored. Most known methanogenesis inhibitors target methanogenic archaeal enzymes. However, interference with syntrophic electron exchange in methanogenic systems presents an additional target for methane control. Here we show that hypophosphite (H2PO2-), an inorganic formate analog, is a potent and selective inhibitor of syntrophic methanogenesis versus primary fermentation in rice field sediments and cattle rumens. Hypophosphite is also generally recognized as safe and relatively non-toxic to plants and animals. Genetic screens and physiological assays in the model methanogen Methanococcus maripaludis S2 implicate formate metabolism as the target of hypophosphite inhibition. Currently, there is no known biological pathway for anaerobic hypophosphite oxidation and hypophosphite is stable in anoxic sediments for weeks to months. Given its widespread natural occurrence, we propose that hypophosphite may modulate carbon cycling in natural environments. Taken together, our results suggest that hypophosphite could be used as a safe, inexpensive, strategy for methane control in syntrophic methanogenic ecosystems.

microbiology↗

Acetogenic methane-carbon monoxide comproportionation: an exergonic but unobserved microbial metabolism

Microbial metabolism relies on redox reactions that exploit chemical disequilibria. While aerobic carbon oxidation, carbon fixation, and fermentation are well studied, the broader space of anaerobic carbon redox reactions remains underexplored. In this study, carbon comproportionation, or reverse fermentation, reactions are identified as a previously unrecognized and potentially favorable class of microbial carbon redox transformations. Particular attention is given to the reaction between methane (CH4) and carbon monoxide (CO) to form acetate, a reaction that has not previously been evaluated despite the widespread occurrence of CH4 and CO in anoxic systems. Gibbs energies ({Delta}Gr) for this reaction were calculated across broad ranges of temperature, pH, and dissolved CH4 and CO concentrations using measured physicochemical data from a wide variety of environmental systems. We show that acetogenic CH4-CO comproportionation is exergonic in all environments where both substrates were detected. The most favorable energetic conditions occur at high pH, low temperature, and high reactant concentrations, consistent with cool serpentinizing systems. In several settings, the calculated Gibbs energy yields and energy densities overlap or exceed known anaerobic metabolisms involving CH4, CO, and acetate. These results demonstrate that acetogenic CH4-CO comproportionation can support microbial energy conservation in a variety of settings. To determine if this metabolism could have operated on early Earth or Mars, modeled fluid compositions show that this reaction is also exergonic under plausible physicochemical regimes. This work broadens the suite of possible microbial energy metabolisms and provides testable criteria for evaluating carbon-based catabolic reactions on Earth and on other planetary bodies. Plain Language SummaryMicroorganisms obtain energy by catalyzing chemical reactions in their environment. The energy available from a reaction can be quantified using Gibbs energies of reaction ({Delta}Gr). When {Delta}Gr < 0, energy is released that microorganisms can use to build biomass and carry out other activities. In this study, we predicted a new energy-yielding reaction that could potentially support microbial life. In this reaction, methane (CH4) is oxidized using carbon monoxide (CO) to produce acetate. Using thermodynamic calculations and measured geochemical data from natural environments, we show that this reaction can release usable energy under a wide range of conditions, including continental serpentinizing systems, the deep continental and marine subsurface, and geothermal springs. We also predict that this reaction could support life under plausible early Earth conditions and in modeled Martian fluids. Together, these observations identify the reaction of CH4 and CO to form acetate as a potentially viable microbial energy source in anoxic environments on Earth and other planetary bodies.

microbiology↗

Organic carbon oxidation state shapes fermentative methanogenic microbiomes and controls greenhouse gas fluxes

Organic compounds with a negative nominal oxidation state of carbon (NOSC) are thermodynamically recalcitrant in anaerobic ecosystems, but few studies have measured the influence of NOSC on carbon degradation rates, gaseous product yields, or microbiome composition. We amended anaerobic rice paddy sediment microcosms with monomeric organic carbon compounds varying in NOSC. Consistent with thermodynamic and stoichiometric predictions, negative NOSC compounds are catabolized more slowly but produce more methane per mole of carbon. Negative NOSC microbiomes have higher alpha diversity, more syntrophs and methanogens, and fewer fermentative bacteria. Strikingly, fermentative bacterial taxa display genomically encoded NOSC catabolic preferences both in the lab and field. Negative NOSC- preferring fermenters have longer predicted doubling times, consistent with the thermodynamic recalcitrance of their preferred substrates. We propose that microbial NOSC preference can be leveraged for predicting and engineering greenhouse gas fluxes and understanding bacterial population dynamics and trait evolution across redox gradients.

microbiology↗

Isolation of a putative sulfur comproportionating microorganism

Sulfur comproportionation is a heretofore undiscovered microbial catabolism that was predicted based on thermodynamic calculations. Here, we report the isolation of an Acidithiobacillus thiooxidans strain from extremely low pH snottite biofilms in the karst at Frasassi, Italy. The strain grew to cell densities of >107 cells mL-1 in autotrophic sulfur comproportionation medium. Whole genome sequencing of the isolate revealed the presence of numerous genes involved in sulfur transformations that could be linked in a sulfur comproportionation pathway. We describe an experimental framework, including measurements of sulfate, sulfide, and S0 concentrations, electron microscopy, and stable and radioisotope incubations coupled with NanoSIMS, scintillation counting and isotope ratio mass spectrometry, for future searches of sulfur comproportionators. SignificanceThe prediction of and search for novel microbial catabolic reactions can be streamlined by using thermodynamics to identify energy-yielding redox reactions that may be catalyzed by microorganisms. This strategy has been used to successfully predict several previously overlooked microbial catabolic reactions, including anaerobic ammonia oxidation (anammox), anaerobic oxidation of methane (AOM), and complete ammonia oxidation (comammox). Sulfur comproportionation, or the coupled reduction of sulfate and oxidation of sulfide to form elemental sulfur, was predicted by thermodynamic calculations to exist as a microbial catabolism in low pH, low-temperature environments. In this study, we describe the isolation of the first putative sulfur comproportionating microorganism and provide a detailed experimental approach that can be applied to future investigations of this novel link in the biogeochemical sulfur cycle.

microbiology↗

Sulfur disproportionating microbial communities in a dynamic, microoxic-sulfidic karst system

Biogeochemical sulfur cycling in sulfidic karst systems is largely driven by abiotic and biological sulfide oxidation, but the fate of elemental sulfur (S0) that accumulates in these systems is not well understood. The Frasassi Cave system (Italy) is intersected by a sulfidic aquifer that mixes with small quantities of oxygen-rich meteoric water, creating Proterozoic-like conditions and supporting a prolific ecosystem driven by sulfur-based chemolithoautotrophy. To better understand the cycling of S0 in this environment, we examined the geochemistry and microbiology of sediments underlying widespread sulfide-oxidizing mats dominated by Beggiatoa. Sediment populations were dominated by uncultivated relatives of sulfur cycling chemolithoautotrophs related to Sulfurovum, Halothiobacillus, Thiofaba, Thiovirga, Thiobacillus, and Desulfocapsa, as well as diverse uncultivated anaerobic heterotrophs affiliated with Bacteroidota, Anaerolineaceae, Lentimicrobiaceae, and Prolixibacteraceae. Desulfocapsa and Sulfurovum populations accounted for 12-26% of sediment 16S rRNA amplicon sequences and were closely related to isolates which carry out autotrophic S0 disproportionation in pure culture. Gibbs energy ({Delta}Gr) calculations revealed that S0 disproportionation under in situ conditions is energy yielding. Microsensor profiles through the mat-sediment interface showed that Beggiatoa mats consume dissolved sulfide and oxygen, but a net increase in acidity was only observed in the sediments below. Together, these findings suggest that disproportionation is an important sink for S0 generated by microbial sulfide oxidation in this oxygen-limited system and may contribute to the weathering of carbonate rocks and sediments in sulfur- rich environments.

microbiology↗

Another chemolithotrophic metabolism missing in nature--sulfur comproportionation

Chemotrophic microorganisms gain energy for cellular functions by catalyzing oxidation-reduction (redox) reactions that are out of equilibrium. Calculations of the Gibbs energy ({Delta}Gr) can identify whether a reaction is thermodynamically favorable, and the accompanying energy yield at the temperature, pressure, and chemical composition in the system of interest. Based on carefully calculated values of {Delta}Gr, we predict a novel microbial metabolism--sulfur comproportionation (3H2S + SO42- + 2H+ = 4S0 + 4H2O). We show that at elevated concentrations of sulfide and sulfate in acidic environments over a broad temperature range, this putative metabolism can be exergonic ({Delta}Gr<0), yielding [~]30-50 kJ/mol. We suggest that this may be sufficient energy to support a chemolithotrophic metabolism currently missing in nature. Other versions of this metabolism, to thiosulfate (H2S + SO42- = S2O32- + H2O) and to sulfite (H2S + 3SO42- = 4SO32- + 2H+), are only moderately exergonic or endergonic even at ideal geochemical conditions. Natural and impacted environments, including sulfidic karst systems, shallow-sea hydrothermal vents, sites of acid mine drainage, and acid-sulfate crater lakes, may be ideal hunting grounds for finding microbial sulfur comproportionators.

microbiology↗