Biology subjects

Ammerman, L.

Publications and source records attributed to Ammerman, L..

2 recordsLinked to original sources

bioRxiv2021

Transport Dynamics of MtrD: an RND multidrug efflux pump from Neisseria gonorrhoeae

The MtrCDE system confers multidrug resistance to Neisseria gonorrhoeae, the causative agent of gonorrhea. Using free and directed Molecular Dynamics (MD) simulations, we analyzed the interactions between MtrD and Azithromycin, a transport substrate of MtrD and a last-resort clinical treatment for multidrug resistant gonorrhea. We then simulated the interactions between MtrD and Streptomycin, an apparent non-substrate of MtrD. Using known conformations of MtrD homologues, we simulated a potential dynamic transport cycle of MtrD using Targeted MD techniques (TMD), and we note that forces were not applied to ligands of interest. In these TMD simulations, we observed the transport of Azithromycin and the rejection of Streptomycin. In an unbiased, long-timescale simulation of AZY-bound MtrD, we observed the spontaneous diffusion of Azithromycin through the periplasmic cleft. Our simulations show how the peristaltic motions of the periplasmic cleft facilitate the transport of substrates by MtrD. Our data also suggest that multiple transport pathways for macrolides may exist within the periplasmic cleft of MtrD.

biochemistry↗

bioRxiv2020

Transport of Alzheimer's Associated Amyloid-β Catalyzed by P-glycoprotein

P-glycoprotein (P-gp) is a critical membrane transporter in the blood brain barrier (BBB) and is implicated in Alzheimers disease (AD). However, previous studies on the ability of P-gp to directly transport the Alzheimers associated amyloid-{beta} (A{beta}) protein have produced contradictory results. Here we use molecular dynamics (MD) simulations, transport substrate accumulation studies in cell culture, and biochemical activity assays to show that P-gp actively transports A{beta}. We observed transport of A{beta}40 and A{beta}42 monomers by P-gp in explicit MD simulations of a putative catalytic cycle. In in vitro assays with P-gp overexpressing cells, we observed enhanced accumulation of fluorescently labeled A{beta}42 in the presence of Tariquidar, a potent P-gp inhibitor. We also showed that A{beta}42 stimulated the ATP hydrolysis activity of isolated P-gp in nanodiscs. Our findings expand the substrate profile of P-gp, and suggest that P-gp may contribute to the onset and progression of AD.

biochemistry↗