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Allard, S. M.

Publications and source records attributed to Allard, S. M..

3 recordsLinked to original sources

My Gut Feels Your Pain - The Social Transfer of Pain Remodels the Gut Microbiome

BackgroundThe "social transfer of pain" is a phenomenon where a mouse experiencing injury-induced hyperalgesia can trigger hyperalgesia in a mouse briefly housed in the same environment ( bystander). The peripheral mechanisms underlying social transfer of pain in mice are not yet well described. As gut microbes are associated with social interactions, pain states, and pain attenuation via the gut-brain axis, we hypothesized that the bystander gut microbiome may respond to the social transfer of pain. MethodsTo induce the social transfer of pain, complete Freunds adjuvant (CFA) was injected into the hindpaw of a mouse which then underwent social interaction with a bystander for one hour. Mechanical sensitivity was assessed using the Von Frey mechanical sensitivity test. Stool samples and mechanical thresholds were taken prior to social interaction, 4 hours post-social interaction, and 24 hours post-social interaction. Metagenomic sequencing characterized the taxonomic and predicted functional gene response of the gut microbiome to CFA-induced pain, social transfer of pain and control groups. ResultsAt 4 hours post-social interaction, bystander animals experienced increased mechanical sensitivity comparable to CFA-injected animals and significantly lower than controls, indicating enhanced hyperalgesia. Compared to baseline, fecal community composition analyses at 4 hours and 24 hours post-interaction showed significant differences in Unweighted Unifrac in both CFA-injected and bystander animals but not in controls. Differential abundance analyses using Maaslin2 identified significant increases in the relative abundances of short chain fatty acid producing taxa like Lachnospiraceae, Ruminococcaceae, Oscillospiraceae and decreases in commensal mouse gut microbes like Muribaculaceae from baseline to 4 hours and 24 hours post-interaction in both bystanders and CFA-injected animals but not in controls. Functional analysis revealed increased abundance of pathways related to short-chain fatty acid production including pyruvate to butanoate and L-lysine fermentation to acetate and butanoate. The altered gut microbiome of bystanders strongly resembles that observed in CFA-injected animals at 4 hours and 24 hours post-injection, with the addition of a unique bystander bloom in several species of Lachnospiraceae. ConclusionsThe changes in the gut microbiome of bystander animals suggest that the social transfer of pain alters bystander peripheral physiology. These results are the first evidence of the potential for such a link.

microbiology↗

Spatiotemporal Microbial Ecoevolutionary Dynamics on the International Space Station

This study presents the most comprehensive spatiotemporal analysis of the ISS microbiome to date. Over a seven-year period, 184 surface samples were collected for live/dead metagenomic profiling, phenotypic characterization of antimicrobial resistance (AMR) and virulence among 102 cultured isolates, and metagenome-assembled genome (MAG) analysis to evaluate evolutionary selection pressures. Despite ecological stability, comparative genomics revealed ongoing microevolution through lateral gene transfer and selection for traits (e.g., radiation resistance and biocide tolerance). Importantly, predictions of AMR and virulence frequently misaligned with experimental outcomes, underscoring the need for functional validation. This dataset highlights a stable core microbiome that persists across years, punctuated by localized adaptation and gene flow. The ISS microbiome exemplifies both ecological resilience and microevolutionary innovation that can inform risk management for long-duration spaceflight.

microbiology↗

Microbiome response in an urban river system is dominated by seasonality over wastewater treatment upgrades

Microorganisms such as coliform-forming bacteria are commonly used to assess freshwater quality for drinking and recreational use. However, such organisms do not exist in isolation; they exist within the context of dynamic, interactive microbial communities which vary through space and time. Elucidating spatiotemporal microbial dynamics is imperative for discriminating robust community changes from ephemeral ecological trends, and for improving our overall understanding of the relationship between microbial communities and ecosystem health. We conducted a seven-year (2013-2019) microbial time-series investigation in the Chicago Area Waterways (CAWS): an urban river system which, in 2016, experienced substantial upgrades to disinfection processes at two wastewater reclamation plants (WRPs) that discharge into the CAWS and improved stormwater capture, to improve river water quality and reduce flooding. Using culture-independent and culture-dependent approaches, we compared CAWS microbial ecology before and after the intervention. Examinations of time-resolved beta distances between WRP-adjacent sites showed that community similarity measures were often consistent with the spatial orientation of site locations to one another and to the WRP outfalls. Fecal coliform results suggested that upgrades reduced coliform-associated bacteria in the effluent and the downstream river community. However, examinations of whole community changes through time suggest that the upgrades did little to affect overall riverine community dynamics, which instead were overwhelmingly driven by yearly patterns consistent with seasonality. Such results emphasize the dynamic nature of microbiomes in open environmental systems such as the CAWS, but also suggest that the seasonal oscillations remain consistent even when perturbed. ImportanceThis study presents a systematic effort to combine 16S rRNA gene amplicon sequencing with traditional culture-based methods to evaluate the influence of treatment innovations and systems upgrades on the microbiome of the Chicago Area Waterway System, representing the longest and most comprehensive characterization of the microbiome of an urban waterway yet attempted. We found that the systems upgrades were successful in improving specific water quality measures immediately downstream of wastewater outflows. Additionally, we found that the implementation of the water quality improvement measures to the river system did not disrupt the overall dynamics of the downstream microbial community, which remained heavily influenced by seasonal trends.

microbiology↗