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Adde, A.

Publications and source records attributed to Adde, A..

2 recordsLinked to original sources

sabinaMBM: An R package for Multiscale Bayesian species distribution Modelling using INLA

1. Regional species distribution models (SDM) calibrated over spatially restricted extents tend to truncate species' ecological niches. Existing nested SDM workflows integrate multi-scale information through sequential combination, which limits formal uncertainty propagation across scales and prevents regional predictions from being explicitly constrained within globally-informed niche boundaries. 2. We introduce sabinaMBM, an R package implementing joint multiscale Bayesian SDM within a unified probabilistic framework built on inlabru/R-INLA. It propagates uncertainty across scales without the computational bottlenecks of MCMC-based approaches. The framework offers multiple coupling architectures ranging from complete independence to hierarchical constraint that can be configured independently for intercepts and covariates. 3. In a range-margin population, hierarchical constraint most improves out-of-sample discrimination where regional data were scarcest, while leaving predictions unchanged where they already suffice, delivering gains precisely where sequential approaches are expected to struggle most. Applied to Quercus petraea across its Iberian trailing-edge, including a spatial field produced the largest single performance gain, consistent across every coupling configuration, and covariate responses diverged by scale for at least one climatic predictor. Under future climate, the constrained model yielded lower suitable habitat estimates and redistributed uncertainty in proportion to cross-scale agreement rather than uniformly. 4. sabinaMBM makes multiscale Bayesian inference accessible without specialist programming. This framework provides robust value for trailing-edge populations and spatial (invasive species) or temporal (climate change) projections where niche truncation risks ecologically implausible outcomes, while simultaneously delivering fine-resolution predictions with properly propagated uncertainty whenever global and regional covariates offer complementary information.

ecology↗

Spatial Biodiversity Indicators and a Composite Index for Conservation Prioritization in Switzerland

Spatially explicit indicators that quantify to which extent landscapes support biodiversity are essential for guiding evidence-based conservation planning. Here, we present a 25-meter resolution dataset for Switzerland, encompassing three key biodiversity indicators-- Complementarity, Extinction Risk, and Ecological Connectivity--developed across 17 major taxonomic groups, using habitat suitability maps for approximately 7,500 individual species. These three indicators capture (1) the contribution of landscapes to taxonomic, functional, and phylogenetic diversity, (2) species vulnerability to extinction and (3) ecological connectivity. Outputs are provided for both terrestrial and aquatic realms, including versions adjusted for species richness, and integrated into composite indices. In total, 272 spatial layers were produced and made openly accessible. Relationships among the three indicators were analyzed to assess their distinct contributions, and expert-based validations were performed to evaluate their ecological plausibility and relevance for conservation applications. This dataset provides a robust foundation to support spatial planning and conservation decision-making in Switzerland and can be used as a blueprint for analogue integration in other countries.

ecology↗