Biology subjects

Adams, B. J.

Publications and source records attributed to Adams, B. J..

5 recordsLinked to original sources

bioRxiv2026

Evidence for endemism and local adaptation in Antarctic soil bacteria

Antarctic soils represent one of the more extreme environments for microbial life on Earth, yet they harbor heterogeneous and diverse microbial communities. Biologists have long hypothesized that Antarctic microorganisms are unique from those found on other continents due to the extreme geographic isolation and the cold, dry, and challenging conditions typical of Antarctica. To test this hypothesis, we focused on a cosmopolitan bacterial genus, Arthrobacter, that is widely distributed across global soils. We first profiled a global metagenomic dataset from both Antarctic and non-Antarctic surface soils to quantify the distributions of Arthrobacter strains. Despite high strain-level diversity, 90% of the strains found in the Antarctic soils were only found on the continent. We then used cultivation-based phenotypic analyses and strain-level genomic comparisons to assess how Antarctic strains and non-Antarctic strains differ in their traits and environmental preferences. Not only did we find evidence of endemism, but Antarctic Arthrobacter also have genomic characteristics and environmental tolerances that suggest they are uniquely adapted to Antarctic conditions. Significance StatementAntarctic soils are among the most extreme environments on Earth, yet they host diverse microbial communities whose adaptations are poorly understood. To test whether Antarctic microbes are distinct from those elsewhere, we examined Arthrobacter, a bacterial genus common in soils worldwide. Analysis of global metagenomic data revealed Arthrobacter strains in Antarctic soils are found exclusively on the continent. Cultivation experiments and comparative genomics further showed that Antarctic strains differ from nonAntarctic relatives in genomic features and environmental tolerances. Together, these results demonstrate that geographically isolated and extreme conditions can drive microbial endemism and local adaptation, even within globally distributed bacterial lineages.

ecology↗

bioRxiv2025

Evidence for trace gas metabolism and widespread antibiotic synthesis in an abiotically-1 driven, Antarctic soil ecosystem

The McMurdo Dry Valleys (MDVs) of Antarctica offer microbial ecologists a uniquely pristine, low-biodiversity model system for understanding fundamental ecological phenomena, the impact of a warming climate on ecosystem functioning, community structure and composition, and the dynamics of adaptation. Despite the scientific value of this system, we still know little about the functional ecology of its biota, especially the bacteria. Here, we analyzed the bacterial taxonomic and functional diversity of 18 shotgun metagenomes using the VEBA metagenome processing pipeline. We recovered 701 medium-to-high quality MAGs ([≥] 50% completeness and contamination < 10%) and 201 high-quality MAGs ([≥] 80% completeness and < 10% contamination), almost 50% more than found in similar sites previously. We found that: 1) community composition shifts along environmental gradients correlated with soil moisture, elevation, and distance to the coast; 2) many MDV bacteria are capable of performing trace gas metabolism; 3) genes associated with antibiotic-mediated competitive interactions (e.g., antibiotic biosynthesis and antibiotic resistance genes) are widespread; and 4) MDV bacteria employ survival strategies common to bacteria in similarly extreme environments. This study provides novel insight into microbial survival strategies in extreme environments and lays the groundwork for a more comprehensive understanding of the autecology of MDV bacteria.

microbiology↗

bioRxiv2025

Gaps and Advances in Long-Term Monitoring of Antarctic Near-Shore and Terrestrial Ecosystems

Environmental change due to greenhouse gas emissions is affecting ecosystems globally; in the polar regions in particular there is already significant evidence of change. The Antarctic Near-Shore and Terrestrial Observation System (ANTOS) aims to establish a cross-continent, cross-national observing network to assess environmental variability and change in the southern polar region. To understand how near-shore and terrestrial Antarctic ecosystems have and will continue to be impacted by anthropogenic environmental changes, a comprehensive review of current long-term monitoring efforts, and two surveys targeting Antarctic researchers, were carried out to evaluate existing monitoring efforts, environmental changes recorded, and to identify areas currently lacking sufficient observations. Results indicate that most data collection is manual and intra-annual, with significant long-term monitoring concentrated in regions with already established infrastructure. The surveys highlight the urgent need for comprehensive coverage of the Antarctics rapidly changing ecosystems using standardized monitoring protocols and increased collaboration. We recommend prioritizing areas experiencing rapid climatic changes and leveraging existing infrastructure to minimize environmental impact of monitoring activities and enhance data comparability across sites.

ecology↗

bioRxiv2020

Exploring the boundaries of microbial habitability in soil

Microbes are widely assumed to be capable of colonizing even the most challenging terrestrial surface environments on Earth given enough time. We would not expect to find surface soils uninhabited by microbes as soils typically harbor diverse microbial communities and viable microbes have been detected in soils exposed to even the most inhospitable conditions. However, if uninhabited soils do exist, we might expect to find them in Antarctica. We analyzed 204 ice-free soils collected from across a remote valley in the Transantarctic Mountains (84 - 85{degrees}S, 174 - 177{degrees}W) and were able to identify a potential limit of microbial habitability. While most of the soils we tested contained diverse microbial communities, with fungi being particularly ubiquitous, microbes could not be detected in many of the driest, higher elevation soils - results that were confirmed using cultivation-dependent, cultivation-independent, and metabolic assays. While we cannot confirm that this subset of soils is completely sterile and devoid of microbial life, our results do show that microbial habitability and activity can be restricted by near-continuous exposure to cold, dry, and salty conditions, establishing the environmental conditions that constrain habitability in terrestrial surface environments. Constant exposure to these conditions for thousands of years has generated uninhabited surface soil environments, with either no detectable microbes or conditions which are not suitable to sustain microbial activity. Such uninhabited soils are unlikely to be unique to the studied region with this work challenging expectations about where microbes might, or might not, be able to thrive on Earth and other planets. Significance StatementCertain surface soils in Antarctica have remained effectively uninhabited due to a near-continuous exposure to cold-dry-salty conditions. This is an unexpected result because soils, even those in hyper-arid deserts, typically contain detectable microorganisms. Additionally, the prevalence of fungi at the colder, drier, higher elevation sites suggests that certain fungi may in fact be better adapted than bacteria or archaea to some of the most challenging soil environments on Earth.

ecology↗

bioRxiv2019

Temperature accounts for the biodiversity of a hyperdiverse group of insects in urban Los Angeles

The urban heat island effect is a worldwide phenomenon that has been linked to species distributions and abundances in cities. However, effects of urban heat on biotic communities are nearly impossible to disentangle from effects of land cover in most cases because hotter urban sites also have less vegetation and more impervious surfaces than cooler sites within cities. We sampled phorid flies, one of the largest, most biologically diverse families of true flies (Insecta: Diptera: Phoridae), at 30 sites distributed within the central Los Angeles Basin, where we found that temperature and the density of urban land cover are decoupled. Abundance, richness, and community composition of phorids inside urban Los Angeles were most parsimoniously accounted for by mean air temperature in the week preceding sampling. Sites with intermediate mean temperatures had more phorid fly individuals and higher richness. Communities were more even at urban sites with lower minimum temperatures and sites located further away from natural areas, suggesting that communities separated from natural source populations may be more homogenized. Species composition was best explained by minimum temperature. Inasmuch as warmer areas within cities can predict future effects of climate change, phorid fly communities are likely to shift non-linearly under future climates in more natural areas. Exhaustive surveys of biotic communities within cities, such as the one we describe here, can provide baselines for determining the effects of urban and global climate warming as they intensify.

ecology↗