Biology subjects

Adam, O.

Publications and source records attributed to Adam, O..

5 recordsLinked to original sources

bioRxiv2025

Pharmacological restoration of deficits in mitochondrial trafficking rescues aberrant axonal activity in tauopathy

Neurodegenerative tauopathy is associated with impairments in both active axonal trafficking and presynaptic function. Although deficits in axonal trafficking reduce supply of mitochondria to presynaptic sites, where they provide a local source of energy production and calcium homeostasis, it is unclear if this contributes to progressive synaptic impairment driven by aberrant tau. Our in vivo two-photon imaging of mitochondrial movement and calcium dynamics in neocortical neurons of tauopathy mice revealed a progressive tau-driven decrease in axonal mitochondrial trafficking that correlates with disruption of presynaptic activity. Furthermore, we have shown that tau-driven presynaptic dysfunction can be rescued by pharmacological upregulation of axonal mitochondrial trafficking. Therefore, as well as revealing the disruptive influence of tau-induced mitochondrial trafficking impairments on presynaptic function in early stages of tauopathy, these findings highlight the therapeutic potential of targeting axonal trafficking to confer synaptic resilience to pathology.

neuroscience↗

bioRxiv2022

Acoustic detection and identification of individual rooks in field recordings using multi-task neural networks

Individual-level monitoring is essential in many behavioural and bioacoustics studies. Collecting and annotating those data is costly in terms of human effort, but necessary prior to conducting analysis. In particular, many studies on bird vocalisations also involve manipulating the animals or human presence during observations, which may bias vocal production. Autonomous recording units can be used to collect large amounts of data without human supervision, largely removing those sources of bias. Deep learning can further facilitate the annotation of large amounts of data, for instance to detect vocalisations, identify the species, or recognise the vocalisation types in recordings. Acoustic individual identification, however, has so far largely remained limited to a single vocalisation type for a given species. This has limited the use of those techniques for automated data collection on raw recordings, where many individuals can produce vocalisations of varying complexity, potentially overlapping one another, with the additional presence of unknown and varying background noise. This paper aims at bridging this gap by developing a system to identify individual animals in those difficult conditions. Our system leverages a combination of multi-scale information integration, multi-channel audio and multi-task learning. The multi-task learning paradigm is based the overall task into four sub-tasks, three of which are auxiliary tasks: the detection and segmentation of vocalisations against other noises, the classification of individuals vocalising at any point during a sample, and the sexing of detected vocalisations. The fourth task is the overall identification of individuals. To test our approach, we recorded a captive group of rooks, a Eurasian social corvid with a diverse vocal repertoire. We used a multi-microphone array and collected a large scale dataset of time-stamped and identified vocalisations recorded, and found the system to work reliably for the defined tasks. To our knowledge, the system is the first to acoustically identify individuals regardless of the vocalisation produced. Our system can readily assist data collection and individual monitoring of groups of animals in both outdoor and indoor settings, even across long periods of time, and regardless of a species vocal complexity. All data and code used in this article is available online.

biophysics↗

bioRxiv2021

Long distance runners in the marine realm: New insights into genetic diversity, kin relationships and social fidelity of Indian Ocean male sperm whales

BackgroundAdult male sperm whales (Physeter macrocephalus) are long distance runners of the marine realm, feeding in high latitudes and mating in tropical and subtropical waters where stable social groups of females and immatures live. Several areas of uncertainty still limit our understanding of their social and breeding behaviour, in particular concerning the potential existence of geographical and/or social fidelities. In this study, using underwater observation and sloughed-skin sampling, we looked for male social fidelity to a specific matrilineal sperm whale group near Mauritius. In addition, we captured a wider picture of kin relationships and genetic diversity of male sperm whales in the Indian Ocean thanks to biopsies of eight unique individuals taken in a feeding ground near the Kerguelen and Crozet Archipelagos (Southern Indian Ocean). ResultsTwenty-six adult male sperm whales, of which 13 were sampled, were identified when socializing with adult females and immatures off Mauritius. Long-term underwater observation recorded several noteworthy social interactions between adult males and adult females and/or immatures. We identified seven possible male recaptures over different years (three by direct observation, and four at the gametic level), which supports a certain level of male social fidelity. Several first- and second-degree kin relationships were highlighted between members of the social unit and adult males, confirming that some of the adult males observed in Mauritian waters are reproductive. Male social philopatry to their natal group can be excluded, as none of the males sampled shared the haplotype characteristic of the matrilineal social group. Mitochondrial DNA control region haplotype and nucleotide diversities calculated over the 21 total male sperm whales sampled were similar to values found by others in the Indian Ocean. ConclusionsOur study strongly supports the existence of some levels of male sperm whale social fidelity, not directed to their social group of birth, in the Indian Ocean. Males sampled in breeding and feeding grounds are linked by kin relationships. Our results support a model of male mediated gene flow occurring at the level of the whole Indian Ocean, likely interconnected with large-scale geographical fidelity to ocean basin, and a small-scale social fidelity to matrilineal social groups.

ecology↗

bioRxiv2021

Underwater photo-identification of marine megafauna: an identity card catalogue of sperm whales (Physeter macrocephalus) off Mauritius Island

The long-term monitoring of long-lived animal populations often requires individual identification. For cetacean populations, this identification is mostly based on morphological characters observable from a boat such as shape, spots and cuts of the back, caudal and dorsal fins. This is well suited for species easily displaying their caudal fins, such as the humpback whales Megaptera novaeangliae, or those whose skin pigmentation patterns enable individual identification. However, for elusive or shier species such as the sperm whales Physeter macrocephalus, this approach may be more challenging as individuals display a rather uniform skin pigmentation. They also do not show very often their caudal fin that must be photographed perpendicularly to the water surface, vertically and fully emerged, uneasing the individual identification from a boat. Immature sperm whales that usually have a caudal fin without any distinctive marks may sometimes be excluded from photo-identification catalogues. Within the framework of the Maubydick project, focusing on the long-term monitoring of sperm whales in Mauritius, passive underwater observation and video recording were used to identify long-lasting body markers (e.g., sex, ventral white markings, cut outs of fins) to improve individual identification. A catalogue of individual identity cards was developed and 38 individuals were recorded (six adult males, 18 adult females and 14 immatures). This catalogue was used in the field and enabled observers to record some nearly-daily and yearly recaptures. Advantages and disadvantages of this method are presented here. Such catalogues represent a robust baseline for conducting behavioural, genetic and acoustic studies in marine megafauna social species. Benefits of such newly acquired knowledge are of first importance to implement relevant conservation plans in the marine realm.

ecology↗

bioRxiv2018

Total lung capacity without plethysmography

BackgroundAmong the most basic measures of respiratory function is the total lung capacity (TLC). TLC is the pulmonary gas volume at maximal lung inflation, which is the sum of the volume of gas that can be exhaled -the vital capacity (VC)- and the volume of gas that cannot -the residual volume (RV). Determination of VC requires only spirometry whereas determination of RV or TLC requires body plethysmography, gas dilution or washout, or thoracic imaging, each of which is more complex than spirometry, and none of which is suited to routine office practice, population screening, or community medicine. To fill this gap, we describe here a new approach to determine TLC without plethysmography.\n\nMethodsIn a heterogeneous population of 434 volunteers (265 male, 169 female; 201 healthy, 170 with airflow obstruction, and 63 with ventilatory restriction), we determined TLC in the standard fashion using conventional body plethysmography (TLCpleth). In the same individuals, we also determined TLC in a novel fashion using the MiniBox (TLCMB). To obtain TLCMB, population-based data from traditional spirometry together with flow-interruption transients were subjected to data mining and machine-learning to create for each individual subject an unbiased statistical determination of TLC.\n\nResultsFor the combined heterogeneous population, we found TLCpleth = 1.02TLCMB -0.091 L, adjusted r2=0.824. For the heterogeneous population as a whole, and for each subpopulation, TLCMB closely tracked TLCpleth. For 26 healthy subjects measured on different days, the coefficient of variation for repeated measurements in was 3.3% for TLCpleth versus 1.6% for TLCMB.\n\nConclusionsThese results establish the validity and potential utility of a new method for rapid, accurate, and repeatable determination of TLC in a heterogeneous patient population, but without the need of a plethysmograph.

bioengineering↗