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Abugattas-Nunez Del Prado, J.

Publications and source records attributed to Abugattas-Nunez Del Prado, J..

2 recordsLinked to original sources

Laminin and Fibronectin Cooperate to Guide Endothelial Self-Organization During Intersegmental Vessel Formation

Endothelial sprouts must integrate cell-intrinsic self-organization with external guidance cues to build stereotyped vascular patterns. During zebrafish intersegmental vessel (ISV) formation, the extra-cellular matrix in the intersomitic space is enriched in laminin and fibronectin, but how these cues guide sprouting remains unclear. We integrated live imaging, perturbation experiments, rescue assays, and mathematical modeling to test whether these matrix components canalize endothelial behavior. Partial loss of laminin or fibronectin slowed endothelial sprouting without abolishing overall ISV formation. In a hybrid mathematical model coupling endothelial self-organization to a deformable extracellular matrix, reduced matrix density predicted slower sprouting and increased vessel fusion. Consistent with this prediction, combined laminin and fibronectin knockdown produced severe ISV mispatterning, including ectopic fusion events and network-like vascular arrangements. Chimeric fibronectin mRNAs rescued vascular patterning and associated somite defects. Comparison of lama1/lama4/fn1a and lama1/lama4/fn1b morphants suggested that somite disorganization exacerbates ISV defects, but is not required for them. Together, our results support a guided self-organization model in which laminin and fibronectin cooperate with other tissue cues to confine endothelial self-organization to the intersomitic space and ensure robust angiogenic patterning.

developmental biology↗

Comparison of robotic automated and manual injection methods in zebrafish embryos for high throughput RNA silencing using CRISPR-CasRx

Recently, the CRISPR-RfxCas13d (CasRx) system was proven to induce efficient mRNA knockdown in animal embryos. Here we compared the efficiency of CasRx-based RNA depletion with that of Cas9-mediated DNA targeting under the same conditions, using automated robotic and manual injection methods. As a proof-of-principle target, we used the no tail (tbxta) gene in zebrafish embryos, for which knockdown and knockout embryonic phenotypes were easy to be scored. Both Cas9 and CasRx systems induced loss of function phenotypes of tbxta gene. Higher percentage of severe phenotype was observed using Cas9 protein compared to the mRNA while the efficiency was similar in terms of Cas13d protein and mRNA. In addition, both the robotic and manual injection approaches yielded similar percentages of phenotypes and mortality rates. Therefore, our study not only showcases the potential of RNA-targeting CRISPR effectors for precise and potent gene knockdown, but also emphasizes automated microinjection in zebrafish embryos as an excellent alternative to manual methods for achieving gene knockdown at a high throughput level.

bioengineering↗