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Abu-Shamma, R.

Publications and source records attributed to Abu-Shamma, R..

2 recordsLinked to original sources

Malaria parasites coordinate host cell remodeling through the AP2-HCR DNA-binding protein

Parasite-induced host cell remodeling is essential for Plasmodium falciparum survival during the intraerythrocytic developmental cycle (IDC), yet the transcriptional mechanisms coordinating this process remain poorly understood. Here, we characterize an essential ApiAP2 transcription factor, PfAP2-HCR (host cell remodeling), during both the asexual and sexual blood stages of P. falciparum. Conditional truncation of pfap2-hcr demonstrated that PfAP2-HCR is essential for ring stage development and parasite maturation. Loss of PfAP2-HCR disrupted the expression of host cell remodeling genes, resulting in the absence of Maurers clefts and collapse of the parasite protein export machinery. Integrated RNA-seq and ChIP-seq analyses revealed that PfAP2-HCR directly or indirectly regulates approximately 30% of exported proteins, including 27 essential exported factors, the parasitophorous vacuole membrane (PVM) resident protein EXP1, and the core PTEX component EXP2. We further show that PfAP2-HCR is also indispensable for gametocytogenesis, as conditional truncation results in either complete ablation or the formation of severely deformed gametocytes. Together, these findings establish PfAP2-HCR as a central transcriptional regulator that orchestrates the expression of host cell remodeling factors required to transform a terminally differentiated erythrocyte into a permissive environment for parasite survival, development, and transmission.

microbiology↗

Human Accelerated Regions regulate gene networks implicated in apical-to-basal neural progenitor fate transitions

The evolution of the human cerebral cortex involved modifications in the composition and proliferative potential of the neural stem cell (NSC) niche during brain development. Human Accelerated Regions (HARs) exhibit a significant excess of human-specific sequence changes and have been implicated in human brain evolution. Multiple studies support that HARs include neurodevelopmental enhancers with novel activities in humans, but their biological functions in NSCs have not been empirically assessed at scale. Here we conducted a direct-capture Perturb-seq screen repressing 180 neurodevelopmentally active HARs in human iPSC-derived NSCs with single-cell transcriptional readout. After profiling >188,000 NSCs, we identified a set of HAR perturbations with convergent transcriptional effects on gene networks involved in NSC apicobasal polarity, a cellular process whose precise regulation is critical to the developmental emergence of basal radial glia (bRG), a progenitor population that is expanded in humans. Across multiple HAR perturbations, we found convergent dysregulation of specific apicobasal polarity and adherens junction regulators, including PARD3, ABI2, SETD2, and PCM1. We found that the repression of one candidate from the screen, HAR181, as well as its target gene CADM1, disrupted apical PARD3 localization and NSC rosette formation. Our findings reveal interconnected roles for HARs in NSC biology and cortical development and link specific HARs to processes implicated in human cortical expansion.

neuroscience↗